 |
Job Description | P76104 | Confidence | 59.18% | Date | Thu Jan 5 12:18:59 GMT 2012 |
Rank | 396 | Aligned Residues | 111 |
% Identity | 12% | Template | c3t4cD_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 1; |
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria
|
Resolution | 1.95 Å |
|
 |
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | I | A | R | E | A | I | L | H | G | A | D | A | V | Y | I | G | G | P | G | F | G | A | R | H | N | A | S | N | S | L | K | D | I | A | E | L | V | P | F | A | H | R | Y | G | A | K | I | F | V | T | L | N | T | I | L | H | D | D | E | L | E | P | A | Q | R | L | I | T | D | L | Y | Q | T | G | V | D | A | L |
Query Conservation |   |
  |
|   |
|   |
|
|
|   |   |
|
|
|
|
|
|
|
|   |   |   |
|   |
|
|   |   |
|   |
|   |   |
|
|
|   |
|
|
|   |   |
|
|   |   |
|   |
|
|
|
|
|
|
|
|
|   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . |
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |
|
|   |   | . | . | . | . | . | . | . |   |   |   |   |   |
|
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |
|   |
|
|   |   |   |
| . | . | . |
|   |   |
|   |   |   |
|
|   |
|   |   |   | . |
|
|   |   |
|
|
|
| . | . |   |
Template Sequence |   |
I | D | T | A | G | R | L | K | E | I | C | A | K | L | . |
. |
. |
. |
. |
. |
. |
N | V | P | F | I | Y | K | S | S | M | D | E | G | L | R | I | L | G | E | V | K | R | Q | L | G | L | P | V | L | T | . |
. |
. |
D | V | H | S | I | D | E | I | E | Q | V | A | S | V | . |
V | D | V | L | Q | T | P | A | . |
. |
F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | . | . | . | . | . | T |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  | . | . | . |  |
|
| S |  |  |  |  |  |  |  |  | T | T | . |
| S |  |  |  |  |
| G | . | . | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
|
|  | . | . |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
|
. | . | . | . | . | . | 80 | . | . | . | . | . | . | . | |
. | . | 90 | . | . | . | . | . | |
|
. |
  |
  |   |
97 | . | . | 100 | . | . | . | . | . | . | . | |
. | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
I | V | Q | D | M | G | I | L | E | L | D | . |
I | P | P | I | E | L | H | A | S | T | Q | C | D | I | R | T | V | E | K | A | K | F | L | S | D | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
G | F | T | Q | I | V | L |
Query Conservation |   |
|
|
|
|   |
|
|
|   |
|   | . |   |
|   |
|   |
|
|
|
|
|
|
|   |
|   |
|   |   |   |
|   |
|
|   |   |
| . | . | . | . | . | . | . | . | . |
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |
|
Template Sequence |   |
L | C | R | Q | T | D | F | I | H | A | C | A | R | S | G | K | P | V | N | I | K | K | G | Q | F | L | A | P | H | D | M | K | N | V | I | D | K | A | R | E | A | A | R | E | A | G | L | S | E | D | R | F | M | A |
Template Known Secondary structure |   |
G | T | T |
|  |  |  |  |  |  |  |  | T | T | S | S |
|  |  |  |  |
|
| T | T | S |
| G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |
|
|  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
113 | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|