 |
Job Description | P76104 | Confidence | 95.08% | Date | Thu Jan 5 12:18:59 GMT 2012 |
Rank | 78 | Aligned Residues | 110 |
% Identity | 17% | Template | c3pg8B_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; |
PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima
|
Resolution | 2.00 Å |
|
 |
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | I | A | R | E | A | I | L | H | G | A | D | A | V | Y | I | G | G | P | G | F | G | A | R | H | N | A | S | N | S | L | K | D | I | A | E | L | V | P | F | A | H | R | Y | G | A | K | I | F | V | T | L | N | T | I | L | H | D | D | E | L | E | P | A | Q | R | L | I | T | D | L | Y | Q | T | G | V | D | A | L |
Query Conservation |   |
  |
|   |
|   |
|
|
|   |   |
|
|
|
|
|
|
|
|   |   |   |
|   |
|
|   |   |
|   |
|   |   |
|
|
|   |
|
|
|   |   |
|
|   |   |
|   |
|
|
|
|
|
|
|
|
|   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |   |   |
|   |   | . | . | . | . | . | . | . | . |
|   |
|
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |
|   |
|   |   |   |
|
|   |   |   |   |   |
|
| . | . | . | . | . | . |   |
|
|
|
|
|   |
Template Sequence |   |
M | E | T | A | H | F | L | S | E | L | G | V | K | V | L | R | G | G | A | Y | K | L | G | . |
. |
. |
. |
. |
. |
. |
. |
E | K | G | L | E | Y | L | R | E | A | A | D | K | Y | G | M | Y | V | V | T | E | A | L | G | E | D | D | L | P | K | V | A | E | Y | A | D | . |
. |
. |
. |
. |
. |
I | I | Q | I | G | A | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |
| . |
| . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |
| S | G | G | G |  |  |  |  |  |  |  |
| S | . | . | . | . | . | . |  |  |  |  |
| G | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . |  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
111 | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
170 | . | . | . | . | . | . |
  |
  |   |
97 | . | . | 100 | . | . | . | . | . | . | . | . | . | |
110 | . | . | . | . | . | . | . | . | . | |
|
120 | . | . | . | . | . | |
. | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |
|
|
| . | . |
|
|
|
|  |  | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | V | Q | D | M | G | I | L | E | L | D | I | P | . |
P | I | E | L | H | A | S | T | Q | C | . |
. |
D | I | R | T | V | E | . |
K | A | K | F | L | S | D | V | G | F | T | Q | I | V | L |
Query Conservation |   |
|
|
|
|   |
|
|
|   |
|   |   |
| . |   |
|   |
|
|
|
|
|
|
| . | . |   |
|   |
|   |   | . |   |
|   |
|
|   |   |
|
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|
|
|   |
|   |   |   |
|   |   |
|   |   |   |
|
|
|   |
|   |   |   |
|
|   |   |
|   |
|
Template Sequence |   |
N | A | Q | N | F | R | L | L | S | K | A | G | S | Y | N | K | P | V | L | L | K | R | G | F | M | N | T | I | E | E | F | L | L | S | A | E | Y | I | A | N | S | G | N | T | K | I | I | L |
Template Known Secondary structure |   |
G | T | T |
|  |  |  |  |  |  |  | G | G | G |
| S |
|  |  |  |  |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
187 | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|