Job Description P76104 Confidence 96.55% Date Thu Jan 5 12:18:59 GMT 2012 Rank 34 Aligned Residues 168 % Identity 16% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	V	S	S	H	R	L	E	L	L	S	P	A	R	D	A	A	I	A	R	E	A	I	L	H	G	A	D	A	V	Y	I	G	G	P	G	F	G	A	R	H	N	A	S	N	S	L	K	D	I	A	E	L	V	P	F	A	H	R	Y	G	A	K	I	F	V	T	L	N	T	I	L	H	D	D	E	L	E	P
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Sequence		L	E	L	P	F	S	N	Q	S	I	I	P	A	A	H	N	Q	K	D	M	E	K	I	L	E	L	D	L	T	Y	M	V	M	L	E	T	H	V	A	.	.	.	.	.	.	.	.	.	.	Q	L	K	A	L	V	K	Y	A	Q	A	G	G	K	K	V	L	L	H	A	D	L	V	.	.	.	N	G	L	K	N
Template Known Secondary structure					S		T	T								S	S	S							T	T	S	S								S			T	T	.	.	.	.	.	.	.	.	.	.	T											T	T							G	G	G		.	.	.		T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.																								.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.											40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure												.																					.	.																								.
Query SS confidence												.																					.	.																								.
Query Sequence		A	Q	R	L	I	T	D	L	Y	Q	.	T	G	V	D	A	L	I	V	Q	D	M	G	I	L	E	L	D	I	P	P	.	.	I	E	L	H	A	S	T	Q	C	D	I	R	T	V	E	K	A	K	F	L	S	D	V	.	G	F	T	Q	I	V	L	A	R	E	L	N	L	D	Q	I	R	A	I	H	Q	A	T
Query Conservation												.																					.	.																								.
Alig confidence												.																					.	.																								.
Template Conservation
Template Sequence		D	D	Y	A	I	D	F	L	C	T	E	I	C	P	D	G	I	I	S	T	R	G	N	A	I	M	K	A	K	Q	H	K	M	L	A	I	Q	R	L	F	M	I	D	S	S	A	Y	N	K	G	V	A	L	I	Q	K	V	Q	P	D	C	I	E	L	L	P	G	I	I	P	E	Q	V	Q	K	M	T	Q	K	L
Template Known Secondary structure		S										T	T			S					S											T	T											S																	S							T	T
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		157	.	.	160														.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	F	I	H	G	A	L	C	V	A	Y	S	G	Q	C	Y	I	S	H	A
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	P	V	I	A	G	G	L	I	E	T	S	E	Q	V	N	Q	V	I	A	S	G	A	I	A	V	T	T	S	N	K	H	L	W	E	G	H
Template Known Secondary structure									S	S			S									T	T	T									G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions