 |
Job Description | P76104 | Confidence | 87.09% | Date | Thu Jan 5 12:18:59 GMT 2012 |
Rank | 206 | Aligned Residues | 77 |
% Identity | 19% | Template | c3e96B_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:dihydrodipicolinate synthase; |
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii
|
Resolution | 1.80 Å |
|
 |
  |   |
18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | |
|
. | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | I | A | R | E | A | I | L | H | G | A | D | A | V | Y | I | G | G | P | G | F | G | A | R | H | N | A | S | N | S | L | K | D | I | A | E | L | V | P | F | A | H | R | Y | . |
. |
G | A | K | I | F | V | T | L | N | T | I | L | H | D | D | E | L | E | P | A | Q | R | L | I | T | D | L | Y | Q | T | G | V | D | A |
Query Conservation |   |
|   |
|   |
|
|
|   |   |
|
|
|
|
|
|
|
|   |   |   |
|   |
|
|   |   |
|   |
|   |   |
|
|
|   |
|
|
|   |   |
|
|   |   | . | . |
|   |
|
|
|
|
|
|
|
|
|   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |   |   |
|
|   |
|
|   |
|   |
|
|
|
| . | . | . |
|   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   | . | . | . | . |
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|
|   |
Template Sequence |   |
E | T | V | D | R | I | V | D | N | G | I | D | V | I | V | P | C | G | N | T | S | . |
. |
. |
E | F | Y | A | L | S | L | E | E | A | K | E | E | V | R | R | T | V | E | Y | V | H | G | R | A | L | V | V | A | G | I | G | Y | A | . |
. |
. |
. |
T | S | T | A | I | E | L | G | N | A | A | K | A | A | G | A | D | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T | T |
|
|  |  |
| T | T | S | T | T | T | . | . | . | T | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |  |  |  |  |  |  |
| S | S | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . | . | . |
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
37 | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | |
|
|
|
. | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
  |
  |   |
96 | . | . | . | 100 | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
Query Sequence |   |
L | I | V | Q | D | M |
Query Conservation |   |
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|
|
Template Sequence |   |
V | M | I | H | M | P |
Template Known Secondary structure |   |
 |  |  |
|
|
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
  |   |
110 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|