Job Description P76104 Confidence 87.41% Date Thu Jan 5 12:18:59 GMT 2012 Rank 199 Aligned Residues 99 % Identity 21% Template c2v9dB_ PDB info PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		65	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.																	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.
Predicted Secondary structure														.	.	.																							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query SS confidence														.	.	.																							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query Sequence		I	F	V	T	L	N	T	I	L	H	D	D	.	.	.	E	L	E	P	A	Q	R	L	I	T	D	L	Y	Q	T	G	V	D	A	L	I	V	.	Q	D	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	E	L	D	I	P	P	I	E	L	H	A	S	T	Q	C	.	.	D	I	R
Query Conservation														.	.	.																							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Alig confidence														.	.	.																							.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation
Template Sequence		I	I	P	P	V	S	T	I	F	T	A	D	G	Q	L	D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	V	L	I	G	T	G	G	T	N	A	R	E
Template Known Secondary structure										B		T	T	S	S	B															T	T		S					S	S	T	T	T	T	G	G	G	S																	T	T	S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																								.	.	.	.						.	.	.	.
Query SS confidence																								.	.	.	.						.	.	.	.
Query Sequence		T	V	E	K	A	K	F	L	S	D	V	G	F	T	Q	I	V	L	A	R	E	L	.	.	.	.	N	L	D	Q	I	.	.	.	.	R	A	I	H	Q	A	T	D	A	T	I	E	F	F
Query Conservation																								.	.	.	.						.	.	.	.
Alig confidence																								.	.	.	.						.	.	.	.
Template Conservation
Template Sequence		T	I	E	L	S	Q	H	A	Q	Q	A	G	A	D	G	I	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	X	L	Y
Template Known Secondary structure													T		S								S	S	S																			S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions