Job Description P76104 Confidence 56.07% Date Thu Jan 5 12:18:59 GMT 2012 Rank 413 Aligned Residues 125 % Identity 20% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.												.	.	.	40	.	.									.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.																																		.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.																																		.	.	.
Query Sequence		A	I	A	R	E	A	I	L	H	G	A	D	A	V	Y	I	G	G	P	.	.	.	.	.	.	.	.	.	.	.	G	F	G	A	R	H	.	.	.	.	.	.	.	.	N	A	S	N	S	L	K	D	I	A	E	L	V	P	F	A	H	R	Y	G	A	K	I	F	V	T	L	N	T	I	L	H	D	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.																																		.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.																																		.	.	.
Template Conservation
Template Sequence		D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G
Template Known Secondary structure										T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	T	S											S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
			76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.																						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	D	E	L	E	P	A	Q	R	L	I	T	D	L	Y	Q	T	G	V	D	A	L	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	M	G	I	L	E	L	D	I	P	P	I	E	L	H	A	S	T	Q	C	D	I	R	T	V	E	K	A	K	F	L	S	D	V
Query Conservation		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	K	K	P	V	L	G	V	G	R	Y	T	D	P	E	K	M	I	E	I	V	T	K
Template Known Secondary structure		S			T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T									T	T		S	S						S														T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		134		.	.	.	.	.	140	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		G	.	F	T	Q	I	V	L	A	R
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		G	Y	A	D	I	I	G	C	A	R
Template Known Secondary structure		T	S		S	B				S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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