Job Description P77196 Confidence 41.39% Date Thu Jan 5 12:26:13 GMT 2012 Rank 39 Aligned Residues 93 % Identity 13% Template d2ag4a1 SCOP info Ganglioside M2 (gm2) activator Ganglioside M2 (gm2) activator Ganglioside M2 (gm2) activator Resolution 1.80

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		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																										.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	I	F	D	G	F	N	Y	V	G	G	S	V	S	T	D	D	Q	M	L	P	P	N	L	R	G	Y	A	P	D	I	S	G	V	A	H	T	T	A	.	.	.	K	V	T	V	S	Q	M	G	R	V	I	Y	E	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	G	K	D	P	A	V	I	R	S	L	T	L	E	P	D	P	I	V	V	P	G	N	V	T	L	S	V	V	G	S	T	S	V	P	L	S	S	P	L	K	V	D	L	V	L	E	K	E	V	A	G	L	W	I	K	I	P	C	T	D	Y	I	G	S	C	T	F	E	H	F	C	D	V	L	D	M	L	I
Template Known Secondary structure		S	T	T	T		S										S	S	S				S												S	S		B		S	S												T	T						B		B	T	T	B	S	B														S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
																						321	.	.	.	.	.	.	.	.	330										.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.				.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.				.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	A	G	P	F	R	I	Q	D	.	.	.	.	.	.	.	.	.	L	G	D	.	S	V	S	G	T	L	H	I	R	I	E	E	Q	N	G	Q	V	Q	E	Y	D	I	S	T	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.				.
Template Conservation
Template Sequence		P	T	G	E	P	C	P	E	P	L	R	T	Y	G	L	P	C	H	C	P	F	K	E	G	T	Y	S	L	P	K	S	E	F	V	V	P	D	L	E	L	P	S	W	L	T	T	G	N	Y	R	I	E	S	V	L	S	S	S	G	K	R	L	G	C	I	K	I	A
Template Known Secondary structure			T	T	S				T	T					T				S	S		B		S																			T	T		S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions