 |
Job Description | P0AFG6 | Confidence | 27.00% | Date | Thu Jan 5 11:26:10 GMT 2012 |
Rank | 126 | Aligned Residues | 21 |
% Identity | 19% | Template | c3iysA_ |
PDB info |
PDB header:virus | Chain: A: PDB Molecule:major capsid protein vp1; |
PDBTitle: homology model of avian polyomavirus asymmetric unit
|
Resolution | 11.30 Å |
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | S | S | V | D | I | L | V | P | D | L | P | E | S | V | A | D | A | T | V | A | T | W |
Query Conservation |   |
|
|   |   |
|
|   |
|
|   |
|
|   |   |   |   |
|
|   |
|   |   |
|
Alig confidence |   |
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
| . | . |   |
|   |
|
|   |
|
|
|
|
|
|
|   |   |
|
|
|
|
Template Sequence |   |
C | A | . |
. |
R | I | P | L | P | T | I | N | D | D | I | T | C | P | T | L | L | M | W |
Template Known Secondary structure |   |
 |  | . | . |  |  |  |
|
|
|
|
|
|
|
| S | S | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  | . | . |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | |
|
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|