Job Description P25741 Confidence 98.71% Date Thu Jan 5 11:42:28 GMT 2012 Rank 254 Aligned Residues 193 % Identity 18% Template c3hamA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminoglycoside phosphotransferase; PDBTitle: structure of the gentamicin-aph(2")-iia complex Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	E	L	K	E	P	L	A	T	L	W	R	G	K	D	A	F	A	E	V	K	K	L	N	G	E	V	F	R	E	L	E	T	R	R	T	L	R	F	E	L	S	G	K	S	Y	F	L	K	W	H	K	G	T	T	L	K	E	I	I	K	N	L	L	S	L	R	M	P	V	L	G	A	D	R	E	W	H	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	V	N	L	D	A	E	I	Y	E	.	.	.	.	.	.	.	.	H	L	N	K	Q	I	K	I	N	E	L	R	Y	L	S	S	G	D	D	S	D	T	F	L	C	N	E	Q	Y	V	V	K	V	P	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	V	R	I	S	Q	K	R	E	F	E	L
Template Known Secondary structure												.	.	.	.	.	.	.	.						S			S									S	S							T	T	T							S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10									.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.														.	.	.	50	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		I	H	R	L	S	D	V	G	V	D	T	M	K	G	I	G	F	G	E	K	G	L	N	P	L	T	R	A	S	F	I	I	T	E	D	L	T	P	T	I	S	L	E	D	Y	C	A	D	W	A	V	N	P	P	D	I	R	V	K	R	M	L	I	A	R	V	A	T	M	V	R	K	M	H	T	A	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																				.	.	.	.	.	.	.																								.	.	.	.	.																								.	.	.	.
Template Conservation																				.	.	.	.	.	.	.																								.	.	.	.	.
Template Sequence		Y	R	F	L	E	N	C	K	L	S	Y	Q	I	P	A	V	V	Y	.	.	.	.	.	.	.	Q	S	D	R	F	N	I	M	K	Y	I	K	G	E	R	I	T	Y	E	Q	Y	H	K	.	.	.	.	.	L	S	E	K	E	K	D	A	L	A	Y	D	E	A	T	F	L	K	E	L	H	S	I	E	I	D	C
Template Known Secondary structure						T	T	S			S	S	B							.	.	.	.	.	.	.			S	S										B								T	T	.	.	.	.	.	S																						S				T
Template Predicted Secondary structure																				.	.	.	.	.	.	.																								.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.								.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
																																																													157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	N	H	R	D	C	Y	I	C	H	F	L	L	H	L	P	F	T	G	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																																																																																.	.
Template Sequence		S	V	S	L	F	S	D	A	L	V	N	K	K	D	K	F	L	Q	D	K	K	L	L	I	S	I	L	E	K	E	Q	L	L	T	D	E	M	L	E	H	I	E	T	I	Y	E	N	I	L	N	N	A	V	L	F	K	Y	T	P	C	L	V	H	N	D	F	S	A	N	N	M	I	F	R	N	N	R	L	.	.
Template Known Secondary structure		T	S					T	T	B																					T	T																			T		G	G	G	G									S			S	G	G	G					T	T			.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	E	L	K	I	S	V	I	D	L	H	R	A	Q	I	R	A	K	V	P	R	R	W	R	D	K	D	L	I	G	L	Y	F	S	S	M	N	I	G	L	T	Q	R	D	I	W	R	F	M	K	V	Y	F	G	M	P	L	R	K	I	L	S
Query Conservation
Alig confidence		.	.	.	.	.																.	.	.	.	.	.														.
Template Conservation		.	.	.	.	.																.	.	.	.	.	.														.
Template Sequence		.	.	.	.	.	F	G	V	I	D	F	G	D	F	N	V	G	D	P	D	.	.	.	.	.	.	N	D	F	L	C	L	L	D	C	S	T	D	D	.	F	G	K	E	F	G	R	K	V	L	K	Y	Y	Q	H	K	A	P	E	V	A	E	R
Template Known Secondary structure		.	.	.	.	.							T	T						G	G	.	.	.	.	.	.	G	G	T	T	T	T	T	S	S	S	S	S	S	.	S											T	T	T		S
Template Predicted Secondary structure		.	.	.	.	.																.	.	.	.	.	.														.
Template SS confidence
							206	.	.	.	210	.	.	.	.	.	.	.	.	.	220							.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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