Job Description P45522 Confidence 94.34% Date Thu Jan 5 12:02:52 GMT 2012 Rank 445 Aligned Residues 168 % Identity 14% Template c3k8zD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis Resolution 2.40 Å

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		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	D	K	P	Q	V	I	V	V	G	F	G	R	F	G	Q	V	I	G	R	L	L	M	A	N	K	M	R	I	T	V	L	E	R	D	I	S	A	V	N	L	M	R	K	Y	G	Y	K	V	Y	Y	G	D	A	T	Q	V	D	L	L	R	S	A	G	A	E	A	A	E	S	I	V	I	T	C	N	E	P	E
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Sequence		D	I	K	G	A	R	V	V	V	Q	G	F	G	N	A	G	S	Y	L	A	K	F	M	H	D	A	G	A	K	V	V	G	I	.	.	.	.	.	.	.	.	.	.	S	D	A	Y	G	G	L	Y	D	P	E	G	L	D	I	.	.	.	.	.	.	.	.	.	D	C	D	I	L	V	P	A	A	I	E	N	Q
Template Known Secondary structure			G	G	G									S	S												T	T							.	.	.	.	.	.	.	.	.	.			S	S						T	T					.	.	.	.	.	.	.	.	.									S		S		S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.											250	.	.	.	.	.	.	.	.	.	260	.	.	.	.										.	.	.	.	.	270	.	.	.	.	.	.	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500					.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530						.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.																															.	.	.	.	.
Query SS confidence																										.	.	.	.																															.	.	.	.	.
Query Sequence		D	T	M	K	L	V	E	I	C	Q	Q	H	F	P	H	L	H	I	L	A	R	A	R	G	.	.	.	.	R	V	E	A	H	E	L	L	Q	A	G	V	T	Q	F	S	R	E	T	F	S	S	A	L	E	L	G	R	K	T	.	.	.	.	.	L	V	T	L	G	M	H	P	H	Q	A	Q	R	A	Q	L	H
Query Conservation																										.	.	.	.																															.	.	.	.	.
Alig confidence											.	.	.	.	.											.	.	.	.																															.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		I	T	E	E	N	A	H	N	I	.	.	.	.	.	R	A	K	I	V	V	E	A	A	N	G	P	T	T	L	E	G	T	K	I	L	S	D	R	D	I	L	L	V	P	D	V	L	A	S	A	G	G	V	T	V	S	Y	F	E	W	V	Q	N	N	Q	G	F	Y	W	S	E	E	E	V	E	E	K	L	E	K
Template Known Secondary structure		B		T	T	T	G	G	G		.	.	.	.	.			S						S	S	S		B											T	T										T	T																T
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.						.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	R	L	D	M	R	M	L	R	E	L	I	P	M	H	A	D	T	V	Q	I	S	R	A	R	E	A	R	R	E	L	E	E	I	F	Q	R	E	M	Q	Q	E	R	R	Q	L	D	G	W
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.
Template Sequence		M	M	V	K	S	F	N	N	I	Y	E	M	A	N	N	R	.	.	.	.	.	.	.	.	.	R	I	D	M	R	L	A	A	Y	M	V	G	V	R	K	M	A	E	A	S	R	F	R	G	W
Template Known Secondary structure																	T	.	.	.	.	.	.	.	.	.	T																						T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.										.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions