Job Description P45522 Confidence 94.86% Date Thu Jan 5 12:02:52 GMT 2012 Rank 386 Aligned Residues 116 % Identity 12% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.												.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	K	P	Q	V	I	V	V	G	F	G	R	F	G	Q	V	I	G	R	L	L	M	A	N	K	M	R	I	T	V	L	E	R	D	I	S	A	V	N	L	M	R	K	Y	G	.	.	.	.	.	.	.	.	.	.	.	Y	K	V	Y	Y	G	D	A	T	Q	V	D	L	L	R	S	A	G	A	E	A	A	E
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation																																																																			.	.
Template Sequence		P	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	G	T	V	E	H	C	D	L	V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	.	.	L	A	F	V	R	Q	T	P	D	N	T	Y	D
Template Known Secondary structure		S											T	T	S							T	T		T	T									S																	G	G	G	G		T	T						S			.	.						T	S		T	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.
		467	.	.	470	.	.	.	.	.	.	.	.	.					480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500									.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure															.	.	.	.																						.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.																						.	.	.	.	.	.	.	.
Query Sequence		S	I	V	I	T	C	N	E	P	E	D	T	M	.	.	.	.	K	L	V	E	I	C	Q	Q	H	F	P	H	L	H	I	L	A	R	A	R	G	.	.	.	.	.	.	.	.	R	V	E	A	H	E	L	L	Q	A	G	V	T	Q	F
Query Conservation															.	.	.	.																						.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	I	I	D	T	T	D	P	A	S	K	L	F	G	E	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A	S	V
Template Known Secondary structure								S						S	S																									T	T	T																T		S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions