Return to main results Retrieve Phyre Job Id

Job DescriptionP45522
Confidence95.98%DateThu Jan 5 12:02:52 GMT 2012
Rank257Aligned Residues183
% Identity14%Templatec3aogA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:glutamate dehydrogenase; PDBTitle: crystal structure of glutamate dehydrogenase (gdhb) from thermus2 thermophilus (glu bound form)
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   397..400.........410.........420.........430 .........440.........450.........460.....
Predicted Secondary structure 












...........













Query SS confidence 

































. . . . . . . . . . .


































Query Sequence  NDDKPQVIVVGFGRFGQVIGRLLMANKMRITVLE. . . . . . . . . . . RDISAVNLMRKYGYKVYYGDATQVDLLRSAGAEAA
Query Conservation        


 
 
  
  

  
         

........... 
   
      
     

      
  


  
Alig confidence 

































...........


































Template Conservation   
 
  




 
 

   
  
   








  
 


  


   
         
     
  
    

    
Template Sequence  QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPV
Template Known Secondary structure 
STT


STT

SS

TT


TSSSTT
TTS

TT


Template Predicted Secondary structure 


































Template SS confidence 















































































   216...220.........230.........240.........250.........260.........270.........280.........290.....
 
   466...470.........480.........490.........500. ........510.........520.........530.. ...
Predicted Secondary structure 









....




......

Query SS confidence 



































. . . .






























. . . . . .


Query Sequence  ESIVITCNEPEDTMKLVEICQQHFPHLHILARARGR. . . . VEAHELLQAGVTQFSRETFSSALELGRKTLV. . . . . . TLG
Query Conservation     
    
           
       




   ....     
   

  

         

   
 ......  
Alig confidence 



















.....










....










.


















......


Template Conservation 






    
   

  
..... 








 
 
 

  

  


. 
 

  






 

 

 
      
Template Sequence  EFLVPAALEKQITEQNAWRI. . . . . RARIVAEGANGPTTPAADDILLEKGV. LVVPDVIANAGGVTVSYFEWVQDFNSYF
Template Known Secondary structure  S
SSSS
B
TTTGGG
.....

S

SSS
B
T
.
TTTTT

Template Predicted Secondary structure 









.....












.









Template SS confidence 















































































   296...300.........310..... ....320.........330.........340. ........350.........360.........
 
   536...540.........550.........560.........570.........580.....
Predicted Secondary structure 





Query SS confidence 

















































Query Sequence  MHPHQAQRAQLHFRRLDMRMLRELIPMHADTVQISRAREARRELEEIFQR
Query Conservation               
  
   
        
              
     
Alig confidence 

















































Template Conservation 
  
 
   
   
      
   
       
 

   
  


 
   
Template Sequence  WTEEEINARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATRVLEARAL
Template Known Secondary structure 

T

Template Predicted Secondary structure 




Template SS confidence 

















































   370.........380.........390.........400.........410.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions