Job Description P45522 Confidence 96.35% Date Thu Jan 5 12:02:52 GMT 2012 Rank 203 Aligned Residues 152 % Identity 13% Template c2ldxA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-lactate dehydrogenase; PDBTitle: characterization of the antigenic sites on the refined 3-2 angstroms resolution structure of mouse testicular lactate3 dehydrogenase c4 Resolution 2.96 Å

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		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.			.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.			.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure																																					.	.																			.	.
Query SS confidence																																					.	.																			.	.
Query Sequence		E	D	E	K	P	W	V	N	D	D	K	P	Q	V	I	V	V	G	F	G	R	F	G	Q	V	I	G	R	L	L	M	A	N	K	M	.	.	R	I	T	V	L	E	R	D	I	S	A	V	N	L	M	R	K	Y	.	.	G	Y	K	V	Y	Y	G	D	A	T	Q	V	D	L	L	R	S	A	G	A	E	A	A
Query Conservation																																					.	.																			.	.
Alig confidence																																					.	.																			.	.
Template Conservation
Template Sequence		Q	N	L	V	P	E	D	K	L	S	R	C	K	I	T	V	V	G	V	G	D	V	G	M	A	C	A	I	S	I	L	L	K	G	L	A	D	E	L	A	L	V	D	A	D	T	D	K	L	R	G	E	A	L	D	L	Q	H	G	S	L	F	L	S	T	P	K	I	V	F	G	K	D	Y	N	V	S	A	N	S
Template Known Secondary structure					S	S															S												T	T	T	S		S							S															T	T	T	T		S								S	S	G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		466	.	.	.	470	.	.	.	.	.																.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.			500	.	.	.	.	.	.	.	.	.	510	.	.				.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.														.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.														.	.	.
Query Sequence		E	S	I	V	I	T	C	N	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	T	M	K	L	V	E	I	C	Q	Q	H	F	P	H	L	H	I	L	A	R	A	R	.	.	G	R	V	E	A	H	E	L	L	Q	A	G	V	.	.	.	T	Q	F	S	R	E	T	F	S	S	A	L	E
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.														.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.														.	.	.
Template Conservation
Template Sequence		K	L	V	I	I	T	A	G	A	R	M	V	S	G	Q	T	R	L	D	L	L	Q	R	N	V	A	I	M	K	A	I	V	P	G	V	I	Q	N	S	P	D	C	K	I	I	V	V	T	N	P	V	D	I	L	T	Y	V	V	W	K	I	S	G	F	P	V	G	R	V	I	G	S	G	C	N	L	D	S	A	R
Template Known Secondary structure									S					T	T	T		S	S		T	T											T	T	T					S	T	T							S	S	S														S		T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	R	K	T	L	V	T	L	G	M	H	P	H	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	Y	L	I	G	E	K	L	G	V	N	P	T	S	C
Template Known Secondary structure											T			T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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