 |
Job Description | P45522 | Confidence | 97.21% | Date | Thu Jan 5 12:02:52 GMT 2012 |
Rank | 87 | Aligned Residues | 120 |
% Identity | 16% | Template | c2dwcB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl |
PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp
|
Resolution | 1.70 Å |
|
 |
  |   |
389 | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | |
. | . | . | . | 460 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|  |  | . |  |  |  |  |
|
|  |  |  |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | E | D | E | K | P | W | V | N | D | D | K | P | Q | V | I | V | V | G | F | G | R | F | G | Q | V | I | G | R | L | L | M | A | N | K | M | R | I | T | V | L | E | R | D | I | S | A | V | N | L | M | R | K | Y | G | Y | K | V | Y | Y | G | D | A | T | Q | V | D | . |
L | L | R | S | A | G | A | E | A | A | E | S |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |   |   | . |   |
|   |   |
|
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |   |   |
|   |   |   |   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |   | . | . |   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
R | D | E | L | G | T | A | T | T | D | S | A | Q | K | I | L | L | L | G | S | G | E | L | G | K | E | I | A | I | E | A | Q | R | L | G | V | E | V | V | A | V | D | R | Y | A | N | . |
. |
A | P | A | M | Q | V | A | H | R | S | Y | V | G | N | M | M | D | K | D | F | L | W | S | V | V | E | R | E | K | P | D | A |
Template Known Secondary structure |   |
|
|
|
|
|
| T | T | S | T | T |
|
|  |  |  |  |  | S |
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  | S | S | T | T | . | . |
|  |  |  |  |  | S | S |  |  |  |  | S |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
| . | . |
|
|  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
  |
  |   |
468 | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | |
|
|
|
. | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | |
. | |
. | . | 510 | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  | . |  | . |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
|
|
|
|
Query Sequence |   |
I | V | I | T | C | N | E | P | E | D | T | M | K | L | V | E | I | C | Q | Q | H | . |
. |
. |
. |
F | P | H | L | H | I | L | A | R | A | R | G | R | V | E | A | H | E | . |
L | . |
L | Q | A | G | V |
Query Conservation |   |
  |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   | . | . | . | . |   |   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |   |   | . |
| . |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
|   |   | . | . |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |
|   |   |   |   |
|
|
Template Sequence |   |
I | I | P | E | I | E | A | I | . |
. |
N | L | D | A | L | F | E | F | E | K | D | G | Y | F | V | V | P | N | A | R | A | T | W | I | A | M | H | R | E | R | L | R | E | T | L | V | K | E | A | K | V |
Template Known Secondary structure |   |
 |  |  |
| S | S |
| S | . | . |
|  |  |  |  |  |  |  |  |  | T | T |
|
| B | S | S |
|  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
86 | . | . | . | 90 | . | . | . | |
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|