Job Description P45522 Confidence 99.95% Date Thu Jan 5 12:02:52 GMT 2012 Rank 2 Aligned Residues 347 % Identity 17% Template c1zcdA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:na(+)/h(+) antiporter 1; PDBTitle: crystal structure of the na+/h+ antiporter nhaa Resolution 3.45 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	F	L	F	A	A	V	A	A	V	P	L	A	S	R	L	G	I	G	A	V	L	G	Y	L	L	A	G	I	A	I	G	P	W	G	L	G	F	I	S	D	V	D	E	I	L	H	F	S	E	L	G	V	V	F	L	M	F	I	I	G	L	E	L	N	P	S	K	L	W	Q	L	R	R	S	I	F	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	I	L	I	I	A	A	I	L	A	M	I	M	A	N	S	G	A	T	S	G	W	Y	H	D	F	L	E	T	P	V	Q	L	R	V	G	S	L	E	I	N	K	N	M	L	L	W	I	N	D	A	L	M	A	V	F	F	L	L	V	G	L	E	V	K	R	E	L	M	Q	G	S	L	A	S	L	R	Q	A
Template Known Secondary structure																			S	S	S								T	T								T	T																																	S	T	T	T	S	S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.																																	.
Query SS confidence																				.	.																																	.
Query Sequence		G	A	A	Q	V	L	L	S	A	A	L	L	A	G	L	L	M	L	.	.	T	D	F	A	W	Q	A	A	V	V	G	G	I	G	L	A	M	S	S	T	A	M	A	L	Q	L	M	R	E	K	G	M	.	N	R	S	E	S	G	Q	L	G	F	S	V	L	L	F	Q	D	L	A	V	I	P	A	L	A	L	V
Query Conservation																				.	.																																	.
Alig confidence																				.	.																																	.
Template Conservation
Template Sequence		A	F	P	V	I	A	A	I	G	G	M	I	V	P	A	L	L	Y	L	A	F	N	Y	A	D	P	I	T	R	E	G	W	A	I	P	A	A	T	D	I	A	F	A	L	G	V	L	A	L	L	G	S	R	V	P	L	A	L	K	I	F	L	M	A	L	A	I	I	D	D	L	G	A	I	I	I	I	A	L	F
Template Known Secondary structure												T	T	T	T					G	G	G			S	S	T	T					T	S	S	S	S													S	S		S	S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	A	G	S	A	D	E	H	F	D	W	M	K	V	G	M	K	V	L	A	F	V	G	M	L	I	G	G	R	Y	L	L	R	P	V	F	R	F	I	A	A	S	G	V	R	E	V	F	T	A	A	T	L	L	L	V	L	G	S	A	L	F	M	D	A	L	G	L	S	M	A	L	G	T	F	I	A	G
Query Conservation
Alig confidence		.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	Y	T	N	D	L	S	M	A	S	L	G	V	A	A	V	A	I	A	V	L	A	V	L	N	L	C	G	A	R	R	T	G	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	V	G	V	V	L	W	T	A	V	L	K	S	G	V	H	A	T	L	A	G	V	I	V	G
Template Known Secondary structure		.	.	.	.	.	.	S																									T	T				T				.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.															.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		248	.	250	.	.	.	.	.	.						.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.											.									.																.																											.	.	.	.
Query SS confidence											.	.	.	.	.											.									.																.																											.	.	.	.
Query Sequence		V	L	L	A	E	S	E	Y	R	.	.	.	.	.	H	E	L	E	T	A	I	D	P	F	.	K	G	L	L	L	G	L	F	.	F	I	S	V	G	M	S	L	N	L	G	V	L	Y	T	.	H	L	L	W	V	V	I	S	V	V	V	L	V	A	V	K	I	L	V	L	Y	L	L	A	R	L	.	.	.	.
Query Conservation											.	.	.	.	.											.									.																.																											.	.	.	.
Alig confidence											.	.	.	.	.											.									.																.																											.	.	.	.
Template Conservation
Template Sequence		F	F	I	P	L	K	E	K	H	G	R	S	P	A	K	R	L	E	H	V	L	H	P	W	V	A	Y	L	I	L	P	L	F	A	F	A	N	A	G	V	S	L	Q	G	V	T	L	D	G	L	T	S	I	L	P	L	G	I	I	A	G	L	L	I	G	K	P	L	G	I	S	L	F	C	W	L	A	L	R	L
Template Known Secondary structure				S				G	G	G	S	S																	T															S	S	S				T					S	S	T	T	T	T						T	T	G	G	G	S	T	T					T	S	S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
								316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	Y	G	V	R	S	S	E	R	M	Q	F	A	G	V	L	S	Q	G	G	E	F	A	F	V	L	F	S	T	A	S	S	Q	R	L	F	Q	G	D	Q	M	A	L	L	L	V	T	V	T	L	S	M	M	T	T	P	L	L	M	K	L	V	D	K	W
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																															.	.
Template Conservation																																						.	.
Template Sequence		K	L	A	H	L	P	E	G	T	T	Y	Q	Q	I	M	V	V	G	I	L	C	G	I	G	F	T	M	S	I	F	I	A	S	L	A	F	.	.	G	S	V	D	P	E	L	I	N	W	A	K	L	G	I	L	V	G	S	I	S	S	A	V	I	G	Y	S	W	L	R	V
Template Known Secondary structure		T	T	T					S			G	G	G	G	T	T					T	T														S	.	.	T	T	S	S		S	S														T	T	T	S	T	T	T	G	G	G	T	T
Template Predicted Secondary structure																																						.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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