 |
Job Description | P45522 | Confidence | 97.67% | Date | Thu Jan 5 12:02:52 GMT 2012 |
Rank | 40 | Aligned Residues | 101 |
% Identity | 15% | Template | c1vpdA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:tartronate semialdehyde reductase; |
PDBTitle: x-ray crystal structure of tartronate semialdehyde reductase2 [salmonella typhimurium lt2]
|
Resolution | 1.65 Å |
|
 |
  |   |
401 | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | Q | V | I | V | V | G | F | G | R | F | G | Q | V | I | G | R | L | L | M | A | N | K | M | R | I | T | V | L | E | R | D | I | S | A | V | N | L | M | R | K | Y | G | Y | K | V | Y | Y | G | D | A | T | Q | V | D | L | L | R | S | A | G | A | E | A | A | E | S | I | V | I | T | C | N | E | P | E | D | T | M | K |
Query Conservation |   |
  |   |
|
|
|   |
|   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |
|
|
|   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|
|   |   |
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   | . | . | . | . |   |   |
|   |   |
|   | . | . | . | . |   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |
Template Sequence |   |
X | K | V | G | F | I | G | L | G | I | X | G | K | P | X | S | K | N | L | L | K | A | G | Y | S | L | V | V | S | D | R | N | P | E | A | I | A | D | V | I | A | A | G | A | E | T | . |
. |
. |
. |
A | S | T | A | K | A | I | . |
. |
. |
. |
A | E | Q | C | D | V | I | I | T | X | L | P | N | S | P | H | V | K | E |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S | T | T |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  | T | T |
|  |  | . | . | . | . |
| S | S |  |  |  |  | . | . | . | . |  |  |  |
| S |  |  |  |  |
|
| S | S |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  | . | . | . | . |  |
|
|  |  |  |  | . | . | . | . |  |  |
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | |
|
|
|
. | 50 | . | . | . | . | . | |
|
|
|
. | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
  |
  |   |
481 | . | . | . | . | |
|
|
. | . | . | . | 490 | . | . | . | . | . | . | |
|
. | . | . | 500 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  | . | . | . |  |  |  |
|
|
|
|  |  |  |  | . | . |  |  |
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | V | E | I | C | . |
. |
. |
Q | Q | H | F | P | H | L | H | I | L | A | . |
. |
R | A | R | G | R | V | E | A | H | E | L | L | Q |
Query Conservation |   |
  |   |   |   |   | . | . | . |
|   |   |   |   |   |   |   |
|
|
| . | . |
|
|   |   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |
Template Sequence |   |
V | A | L | G | E | N | G | I | I | E | G | A | K | P | G | T | V | L | I | D | X | S | S | I | A | P | L | A | S | R | E | I | S | D |
Template Known Secondary structure |   |
 |  |  | S | T | T |
|  |  |  |  |
|
| T | T |
|  |  |  |  |
| S |
|
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|