Job Description P45522 Confidence 95.97% Date Thu Jan 5 12:02:52 GMT 2012 Rank 260 Aligned Residues 143 % Identity 12% Template c1pzfD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:lactate dehydrogenase; PDBTitle: t.gondii ldh1 ternary complex with apad+ and oxalate Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.										.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																																.																			.	.	.	.	.	.	.	.	.
Query SS confidence																																.																			.	.	.	.	.	.	.	.	.
Query Sequence		P	W	V	N	D	D	K	P	Q	V	I	V	V	G	F	G	R	F	G	Q	V	I	G	R	L	L	M	A	N	K	.	M	R	I	T	V	L	E	R	D	I	S	A	V	N	L	M	R	K	.	.	.	.	.	.	.	.	.	Y	G	Y	K	V	Y	Y	G	D	A	T	Q	V	D	L	L	R	S	A	G	A	E
Query Conservation																																.																			.	.	.	.	.	.	.	.	.
Alig confidence																																.																			.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence		P	A	L	V	Q	R	R	K	K	V	A	M	I	G	S	G	M	I	G	G	T	M	G	Y	L	C	A	L	R	E	L	A	D	V	V	L	Y	D	V	V	K	G	M	P	E	G	K	A	L	D	L	S	H	V	T	S	V	V	D	T	N	V	S	V	R	A	E	Y	S	Y	E	A	A	L	.	.	.	.	.	T
Template Known Secondary structure						S									S		S														T									S	S	S	S																T	T										S						.	.	.	.	.	T
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.
		464	.	.	.	.	.	470	.	.	.																					.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.			500	.	.	.	.	.	.	.	.	.	510	.				.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.													.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.													.	.	.
Query Sequence		A	A	E	S	I	V	I	T	C	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	E	D	T	M	K	L	V	E	I	C	Q	Q	H	F	P	H	L	H	I	L	A	R	A	R	.	.	G	R	V	E	A	H	E	L	L	Q	A	G	.	.	.	V	T	Q	F	S	R	E
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.													.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.													.	.	.
Template Conservation
Template Sequence		G	A	D	C	V	I	V	T	A	G	L	T	K	V	P	G	K	P	D	S	E	W	S	R	N	D	L	L	P	F	N	S	K	I	I	R	E	I	G	Q	N	I	K	K	Y	C	P	K	T	F	I	I	V	V	T	N	P	L	D	C	M	V	K	V	M	C	E	A	S	G	V	P	T	N	M	I	C	G	M	A
Template Known Secondary structure		T		S							S		S	S		T	T			G	G	G			S	G	G	G																				T	T	S							S	S																T	T	S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	S	S	A	L	E	L	G	R	K	T	L	V	T	L	G	M	H	P	H	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	M	L	D	S	G	R	F	R	R	Y	V	A	D	A	L	S	V	S	P	R	D	V
Template Known Secondary structure																		T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions