Job Description P45522 Confidence 94.59% Date Thu Jan 5 12:02:52 GMT 2012 Rank 421 Aligned Residues 146 % Identity 14% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.					.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.		.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																																	.
Query SS confidence																				.	.	.	.																																	.
Query Sequence		M	R	I	T	V	L	E	R	D	I	S	A	V	N	L	M	R	K	.	.	.	.	Y	G	Y	K	V	Y	Y	G	D	A	T	Q	V	D	L	L	R	S	A	G	A	E	A	A	E	S	I	V	I	T	C	N	.	E	P	E	D	T	M	K	L	V	E	I	C	Q	Q	H	F	P	H	L	H	I	L	A	R	A
Query Conservation																				.	.	.	.																																	.
Alig confidence																				.	.	.	.										.																							.
Template Conservation																																	.
Template Sequence		M	N	V	L	V	I	E	D	D	K	V	F	R	G	L	L	E	E	Y	L	S	M	K	G	I	K	V	E	S	A	E	.	R	G	K	E	A	Y	K	L	L	S	E	K	H	F	N	V	V	L	L	D	L	L	L	P	D	V	N	G	L	E	I	L	K	W	I	K	E	R	S	P	E	T	E	V	I	V	I	T
Template Known Secondary structure																									T							S	.	S											S			S						S	B		S	S	S	B													T	T	S
Template Predicted Secondary structure																																	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
				499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	G	R	V	E	A	H	E	L	L	Q	A	G	V	T	Q	F	S	R	E	T	F	S	S	A	L	E	L	G	R	K	T	L	V	T	L	G	M	H	P	H	Q	A	Q	R	A	Q	L	H	F	R	R	L	D	M	R	M	L	R	E	L	I	P	M	H	A	D	T	V	Q	I	S	R	A	R	E	A	R
Query Conservation		.	.
Alig confidence		.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	H	G	T	I	K	T	A	V	E	A	M	K	M	G	A	Y	D	F	L	T	K	P	C	M	L	E	E	I	E	L	T	.	.	.	.	.	.	.	.	.	.	.	.	I	N	K	A	I	E	H	R	K	L	R	K	E	N	E	L	L	R	R	E	K	D	L	K	E	E	E	Y	V	F	E	S	P	K	M	K
Template Known Secondary structure			T	T										T	T	T								S										.	.	.	.	.	.	.	.	.	.	.	.																							T	T								S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.													.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		577	.	.	580	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	L	E	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	L	E	K	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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