Job Description P45522 Confidence 96.21% Date Thu Jan 5 12:02:52 GMT 2012 Rank 231 Aligned Residues 137 % Identity 17% Template c1ldbA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-l-lactate dehydrogenase; PDBTitle: structure determination and refinement of bacillus2 stearothermophilus lactate dehydrogenase Resolution 2.80 Å

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		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.			.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.									.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure																														.	.																		.	.	.	.	.	.	.	.
Query SS confidence																														.	.																		.	.	.	.	.	.	.	.
Query Sequence		N	D	D	K	P	Q	V	I	V	V	G	F	G	R	F	G	Q	V	I	G	R	L	L	M	A	N	K	M	.	.	R	I	T	V	L	E	R	D	I	S	A	V	N	L	M	R	K	.	.	.	.	.	.	.	.	Y	G	Y	K	V	Y	Y	G	D	A	T	Q	V	D	L	L	R	S	A	G	A	E	A	A	E
Query Conservation																														.	.																		.	.	.	.	.	.	.	.
Alig confidence																														.	.																		.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.
Template Sequence		N	N	G	G	A	R	V	V	V	I	G	A	G	F	V	G	A	S	Y	V	F	A	L	M	N	Q	G	I	A	D	E	I	V	L	I	D	A	N	E	S	K	A	I	G	D	A	M	D	F	N	H	G	K	V	F	A	P	K	P	V	D	I	W	D	Y	D	D	.	.	.	.	.	.	.	.	C	R	D	A	D
Template Known Secondary structure		S			S	S								S												T	T	T			S							S	S															G	G	G	T	T								G	G	G	.	.	.	.	.	.	.	.		S	S		S
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.									.	.	.	.	.
		467	.	.	470	.	.	.	.	.	.								.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.			.	.	.	.	.	.	510	.	.				.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.																												.	.										.	.	.
Query SS confidence												.	.	.	.	.	.	.																												.	.										.	.	.
Query Sequence		S	I	V	I	T	C	N	E	P	E	.	.	.	.	.	.	.	D	T	M	K	L	V	E	I	C	Q	Q	H	F	P	H	L	H	I	L	A	R	A	R	G	R	V	E	.	.	A	H	E	L	L	Q	A	G	V	.	.	.	T	Q	F	S	R	E	T	F	S	S	A	L	E	L	G	R	K	T	L	V	T	L
Query Conservation												.	.	.	.	.	.	.																												.	.										.	.	.
Alig confidence												.	.	.	.	.	.	.																												.	.										.	.	.
Template Conservation
Template Sequence		L	V	V	I	C	A	G	A	N	D	L	V	D	K	N	I	A	I	F	R	S	I	V	E	S	V	M	A	S	G	F	Q	G	L	F	L	V	A	T	N	P	V	D	I	L	T	Y	A	T	W	K	F	S	G	L	P	H	E	R	V	I	G	S	G	T	I	L	D	T	A	R	F	R	F	L	L	G	E	Y	F
Template Known Secondary structure																														T	T			S							S	S																T	T	S					G	G	G	T													T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		535	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	H	P	H	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	A	P	Q	N	V
Template Known Secondary structure		T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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