Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	T	I	A	T	E	N	A	P	A	A	I	G	P	Y	V	Q	G	V	D	L	G	N	M	I	I	T	S	G	Q	I	P	V	N	P	K	T	G	E	V	P	A	D	V	A	A	Q	A	R	Q	S	L	D	N	V	K	A	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																												?					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	E	A	A	G	L	K	V	G	D	I	V	K	T	T	V	F	V	K	D	L	N	D	F	A	T	V	N	A	T	Y	E	A	F	F	T	E	H	N	A	T	F	P	A	R	S	C	V	E	V	A	R	L	P	K	D	V	K	I	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		I	E	A	I	A	V	R	R
Secondary structure
SS confidence
Disorder								?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1j7h chain A Region: 1 - 128 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 77% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 1qu9 chain A Region: 2 - 128 Aligned: 126 Modelled: 127 Confidence: 100.0% Identity: 100% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 1oni chain A Region: 1 - 128 Aligned: 125 Modelled: 128 Confidence: 100.0% Identity: 46% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 1nq3 chain A Region: 1 - 128 Aligned: 125 Modelled: 128 Confidence: 100.0% Identity: 46% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 3quw chain A Region: 3 - 128 Aligned: 123 Modelled: 126 Confidence: 100.0% Identity: 38% PDB header:protein binding Chain: A: PDB Molecule:protein mmf1; PDBTitle: crystal structure of yeast mmf1 Phyre2 PDB 2b33 chain A domain 1 Region: 2 - 128 Aligned: 124 Modelled: 127 Confidence: 100.0% Identity: 48% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 1qah chain A Region: 1 - 127 Aligned: 124 Modelled: 127 Confidence: 100.0% Identity: 49% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 3k0t chain A Region: 2 - 126 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 42% PDB header:sugar binding protein Chain: A: PDB Molecule:endoribonuclease l-psp, putative; PDBTitle: crystal structure of pspto -psp protein in complex with d-beta-glucose2 from pseudomonas syringae pv. tomato str. dc3000 Phyre2 PDB 1jd1 chain A Region: 3 - 128 Aligned: 123 Modelled: 126 Confidence: 100.0% Identity: 41% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 2cvl chain A domain 1 Region: 2 - 128 Aligned: 124 Modelled: 126 Confidence: 100.0% Identity: 39% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 1qd9 chain A Region: 2 - 128 Aligned: 124 Modelled: 127 Confidence: 100.0% Identity: 49% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 3r0p chain B Region: 2 - 126 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 43% PDB header:hydrolase Chain: B: PDB Molecule:l-psp putative endoribonuclease; PDBTitle: crystal structure of l-psp putative endoribonuclease from uncultured2 organism Phyre2 PDB 1xrg chain B Region: 3 - 127 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 51% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative translation initiation inhibitor, yjgf PDBTitle: conserved hypothetical protein from clostridium2 thermocellum cth-2968 Phyre2 PDB 2dyy chain G Region: 2 - 128 Aligned: 124 Modelled: 127 Confidence: 100.0% Identity: 55% PDB header:structural genomics, unknown function Chain: G: PDB Molecule:upf0076 protein ph0854; PDBTitle: crystal structure of putative translation initiation2 inhibitor ph0854 from pyrococcus horikoshii Phyre2 PDB 1x25 chain A domain 1 Region: 3 - 127 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 48% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 3l7q chain D Region: 3 - 126 Aligned: 121 Modelled: 124 Confidence: 100.0% Identity: 54% PDB header:translation Chain: D: PDB Molecule:putative translation initiation inhibitor, aldr regulator- PDBTitle: crystal structure of aldr from streptococcus mutans Phyre2 PDB 1xrg chain A Region: 3 - 127 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 51% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 3lme chain E Region: 1 - 127 Aligned: 125 Modelled: 127 Confidence: 100.0% Identity: 25% PDB header:translation Chain: E: PDB Molecule:possible translation initiation inhibitor; PDBTitle: structure of probable translation initiation inhibitor from2 (rpa2473) from rhodopseudomonas palustris Phyre2 PDB 3m4s chain C Region: 3 - 126 Aligned: 121 Modelled: 124 Confidence: 100.0% Identity: 37% PDB header:unknown function Chain: C: PDB Molecule:putative endoribonuclease l-psp; PDBTitle: crystal structure of a putative endoribonuclease l-psp from entamoeba2 histolytica, orthorhombic form Phyre2 PDB 3v4d chain C Region: 10 - 128 Aligned: 116 Modelled: 119 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: C: PDB Molecule:aminoacrylate peracid reductase rutc; PDBTitle: crystal structure of rutc protein a member of the yjgf family from2 e.coli Phyre2 1 d1j7ha_ 2 d1qu9a_ 3 d1onia_ 4 d1nq3a_ 5 c3quwA_ 6 d2b33a1 7 d1qaha_ 8 c3k0tA_ 9 d1jd1a_ 10 d2cvla1 11 d1qd9a_ 12 c3r0pB_ 13 c1xrgB_ 14 c2dyyG_ 15 d1x25a1 16 c3l7qD_ 17 d1xrga_ 18 c3lmeE_ 19 c3m4sC_ 20 c3v4dC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1j7ha_ 100.0 77 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 2 d1qu9a_ 100.0 100 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 3 d1onia_ 100.0 46 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 4 d1nq3a_ 100.0 46 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 5 c3quwA_ 100.0 38 PDB header:protein binding Chain: A: PDB Molecule:protein mmf1; PDBTitle: crystal structure of yeast mmf1 6 d2b33a1 100.0 48 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 7 d1qaha_ 100.0 49 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 8 c3k0tA_ 100.0 42 PDB header:sugar binding protein Chain: A: PDB Molecule:endoribonuclease l-psp, putative; PDBTitle: crystal structure of pspto -psp protein in complex with d-beta-glucose2 from pseudomonas syringae pv. tomato str. dc3000 9 d1jd1a_ 100.0 41 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 10 d2cvla1 100.0 39 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 11 d1qd9a_ 100.0 49 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 12 c3r0pB_ 100.0 43 PDB header:hydrolase Chain: B: PDB Molecule:l-psp putative endoribonuclease; PDBTitle: crystal structure of l-psp putative endoribonuclease from uncultured2 organism 13 c1xrgB_ 100.0 51 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative translation initiation inhibitor, yjgf PDBTitle: conserved hypothetical protein from clostridium2 thermocellum cth-2968 14 c2dyyG_ 100.0 55 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:upf0076 protein ph0854; PDBTitle: crystal structure of putative translation initiation2 inhibitor ph0854 from pyrococcus horikoshii 15 d1x25a1 100.0 48 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 16 c3l7qD_ 100.0 54 PDB header:translation Chain: D: PDB Molecule:putative translation initiation inhibitor, aldr regulator- PDBTitle: crystal structure of aldr from streptococcus mutans 17 d1xrga_ 100.0 51 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 18 c3lmeE_ 100.0 25 PDB header:translation Chain: E: PDB Molecule:possible translation initiation inhibitor; PDBTitle: structure of probable translation initiation inhibitor from2 (rpa2473) from rhodopseudomonas palustris 19 c3m4sC_ 100.0 37 PDB header:unknown function Chain: C: PDB Molecule:putative endoribonuclease l-psp; PDBTitle: crystal structure of a putative endoribonuclease l-psp from entamoeba2 histolytica, orthorhombic form 20 c3v4dC_ 100.0 28 PDB header:oxidoreductase Chain: C: PDB Molecule:aminoacrylate peracid reductase rutc; PDBTitle: crystal structure of rutc protein a member of the yjgf family from2 e.coli 21 d2cwja1 not modelled 100.0 45 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 22 c2ig8C_ not modelled 100.0 31 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein pa3499; PDBTitle: crystal structure of a protein of unknown function pa3499 from2 pseudomonas aeruginosa 23 d1pf5a_ not modelled 100.0 25 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 24 d2otma1 not modelled 100.0 21 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 25 c3kjjL_ not modelled 100.0 25 PDB header:unknown function Chain: L: PDB Molecule:nmb1025 protein; PDBTitle: crystal structure of nmb1025, a member of yjgf protein family, from2 neisseria meningitidis (hexagonal crystal form) 26 c3i7tA_ not modelled 100.0 27 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv2704, a member of highly conserved2 yjgf/yer057c/uk114 family, from mycobacterium tuberculosis 27 d2ewca1 not modelled 100.0 17 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 28 c3k12F_ not modelled 100.0 21 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:uncharacterized protein a6v7t0; PDBTitle: crystal structure of an uncharacterized protein a6v7t0 from2 pseudomonas aeruginosa 29 c3gtzA_ not modelled 100.0 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative translation initiation inhibitor; PDBTitle: crystal structure of a putative translation initiation inhibitor from2 salmonella typhimurium 30 c3d01G_ not modelled 100.0 28 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the protein atu1372 with unknown function from2 agrobacterium tumefaciens 31 c3i3fB_ not modelled 100.0 24 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: hypothetical protein from giardia lamblia gl50803_14299 32 c3lybC_ not modelled 99.9 32 PDB header:hydrolase Chain: C: PDB Molecule:putative endoribonuclease; PDBTitle: structure of putative endoribonuclease(kp1_3112) from2 klebsiella pneumoniae 33 d1crka1 not modelled 14.6 7 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 34 d1qh4a1 not modelled 13.5 5 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 35 c2wknE_ not modelled 13.3 20 PDB header:hydrolase Chain: E: PDB Molecule:formamidase; PDBTitle: gamma lactamase from delftia acidovorans 36 d1g0wa1 not modelled 12.0 9 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 37 d1w5da1 not modelled 10.7 27 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 38 d2ex2a1 not modelled 10.1 16 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 39 c2jvfA_ not modelled 10.1 9 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 40 c1qysA_ not modelled 9.7 12 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 41 d1i0ea1 not modelled 9.5 7 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 42 d1u6ra1 not modelled 8.9 7 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 43 d1vrpa1 not modelled 7.8 7 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 44 d1w79a1 not modelled 7.4 20 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 45 d1qk1a1 not modelled 6.0 9 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 46 d1vjta2 not modelled 5.3 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:AglA-like glucosidase 47 c2zxeB_ not modelled 5.3 10 PDB header:hydrolase/transport protein Chain: B: PDB Molecule:na+,k+-atpase beta subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 48 c3a3eB_ not modelled 5.1 11 PDB header:hydrolase Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0