Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

A

S

K

F

Q

N

R

L

V

G

T

I

V

L

V

A

L

G

V

I

V

L

P

G

L

L

D

G

Q

K

K

H

Y

Q

D

E

F

A

A

I

P

L

V

P

K

A

G

D

R

D

E

P

D

M

M

P

A

A

T

Secondary structure

SS confidence

Disorder

?

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?

?

?

?

?

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?

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?

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?

?

?

?

?

?

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?

?

?

?

?

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?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

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120

Sequence

Q

A

L

P

T

Q

P

P

E

G

A

A

E

E

V

R

A

G

D

A

A

A

P

S

L

D

P

A

T

I

A

A

N

N

T

E

F

E

P

E

P

A

P

V

A

P

P

K

P

K

P

V

E

P

P

K

P

K

V

E

Secondary structure

SS confidence

Disorder

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Disorder confidence

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130

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140

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150

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160

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170

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180

Sequence

A

P

P

A

P

K

P

E

P

K

P

V

V

E

E

K

A

A

P

T

G

K

A

Y

V

V

Q

L

G

A

L

K

N

A

D

K

V

N

E

I

V

G

K

L

R

G

A

G

Y

R

V

Y

T

S

P

S

T

P

V

Q

Secondary structure

SS confidence

Disorder

?

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?

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?

Disorder confidence

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190

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200

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210

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220

Sequence

G

K

I

T

R

I

L

V

G

P

D

A

S

K

D

K

L

K

G

S

L

G

E

L

K

Q

L

S

G

L

S

G

V

V

M

G

Y

T

P

N

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1x60 chain A Region: 136 - 218 Aligned: 78 Modelled: 83 Confidence: 99.7% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc Phyre2 PDB 1uta chain A Region: 140 - 216 Aligned: 72 Modelled: 77 Confidence: 99.6% Identity: 21% Fold: Ferredoxin-like Superfamily: Sporulation related repeat Family: Sporulation related repeat Phyre2 PDB 1wyu chain A domain 1 Region: 151 - 208 Aligned: 58 Modelled: 58 Confidence: 78.2% Identity: 12% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Glycine dehydrogenase subunits (GDC-P) Phyre2 PDB 1dq3 chain A domain 4 Region: 150 - 193 Aligned: 44 Modelled: 44 Confidence: 77.6% Identity: 14% Fold: Homing endonuclease-like Superfamily: Homing endonucleases Family: Intein endonuclease Phyre2 PDB 1m32 chain A Region: 156 - 208 Aligned: 51 Modelled: 52 Confidence: 75.5% Identity: 16% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 1js3 chain A Region: 155 - 208 Aligned: 53 Modelled: 54 Confidence: 71.7% Identity: 8% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Pyridoxal-dependent decarboxylase Phyre2 PDB 1iug chain A Region: 139 - 208 Aligned: 69 Modelled: 70 Confidence: 71.0% Identity: 12% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Cystathionine synthase-like Phyre2 PDB 3k40 chain B Region: 155 - 208 Aligned: 53 Modelled: 54 Confidence: 69.1% Identity: 11% PDB header:lyase Chain: B: PDB Molecule:aromatic-l-amino-acid decarboxylase; PDBTitle: crystal structure of drosophila 3,4-dihydroxyphenylalanine2 decarboxylase Phyre2 PDB 2yrr chain A Region: 139 - 210 Aligned: 71 Modelled: 72 Confidence: 68.8% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class v; PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8 Phyre2 PDB 1pmm chain A Region: 156 - 208 Aligned: 53 Modelled: 53 Confidence: 68.4% Identity: 17% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Pyridoxal-dependent decarboxylase Phyre2 PDB 3cai chain A Region: 156 - 209 Aligned: 53 Modelled: 54 Confidence: 67.8% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Phyre2 PDB 3f0h chain A Region: 140 - 209 Aligned: 69 Modelled: 70 Confidence: 65.2% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution Phyre2 PDB 3ffr chain A Region: 156 - 209 Aligned: 53 Modelled: 54 Confidence: 65.1% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution Phyre2 PDB 1bs0 chain A Region: 151 - 209 Aligned: 56 Modelled: 59 Confidence: 62.6% Identity: 20% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 PDB 2fyf chain B Region: 136 - 208 Aligned: 72 Modelled: 73 Confidence: 60.0% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:phosphoserine aminotransferase; PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis Phyre2 PDB 2zxe chain G Region: 8 - 30 Aligned: 23 Modelled: 23 Confidence: 59.1% Identity: 48% PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state Phyre2 PDB 2qma chain B Region: 155 - 208 Aligned: 53 Modelled: 51 Confidence: 57.5% Identity: 8% PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Phyre2 PDB 1m6s chain A Region: 139 - 209 Aligned: 66 Modelled: 71 Confidence: 56.5% Identity: 18% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 2dr1 chain A Region: 139 - 208 Aligned: 69 Modelled: 70 Confidence: 52.0% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3 Phyre2 PDB 3cq6 chain E Region: 139 - 211 Aligned: 62 Modelled: 73 Confidence: 51.5% Identity: 11% PDB header:transferase Chain: E: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound ) Phyre2 1 c1x60A_ 2 d1utaa_ 3 d1wyua1 4 d1dq3a4 5 d1m32a_ 6 d1js3a_ 7 d1iuga_ 8 c3k40B_ 9 c2yrrA_ 10 d1pmma_ 11 c3caiA_ 12 c3f0hA_ 13 c3ffrA_ 14 d1bs0a_ 15 c2fyfB_ 16 c2zxeG_ 17 c2qmaB_ 18 d1m6sa_ 19 c2dr1A_ 20 c3cq6E_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1x60A_ 99.7 19 PDB header:hydrolase Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc 2 d1utaa_ 99.6 21 Fold:Ferredoxin-like Superfamily:Sporulation related repeat Family:Sporulation related repeat 3 d1wyua1 78.2 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Glycine dehydrogenase subunits (GDC-P) 4 d1dq3a4 77.6 14 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 5 d1m32a_ 75.5 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 6 d1js3a_ 71.7 8 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Pyridoxal-dependent decarboxylase 7 d1iuga_ 71.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 8 c3k40B_ 69.1 11 PDB header:lyase Chain: B: PDB Molecule:aromatic-l-amino-acid decarboxylase; PDBTitle: crystal structure of drosophila 3,4-dihydroxyphenylalanine2 decarboxylase 9 c2yrrA_ 68.8 17 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class v; PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8 10 d1pmma_ 68.4 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Pyridoxal-dependent decarboxylase 11 c3caiA_ 67.8 13 PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein 12 c3f0hA_ 65.2 12 PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution 13 c3ffrA_ 65.1 21 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution 14 d1bs0a_ 62.6 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 15 c2fyfB_ 60.0 13 PDB header:transferase Chain: B: PDB Molecule:phosphoserine aminotransferase; PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis 16 c2zxeG_ 59.1 48 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 17 c2qmaB_ 57.5 8 PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus 18 d1m6sa_ 56.5 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 19 c2dr1A_ 52.0 14 PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3 20 c3cq6E_ 51.5 11 PDB header:transferase Chain: E: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound ) 21 d1fg7a_ not modelled 49.5 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 22 c2jp3A_ not modelled 49.5 26 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 23 d2ivda2 not modelled 48.3 17 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:L-aminoacid/polyamine oxidase 24 c2kncB_ not modelled 48.2 32 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 25 c3hdoB_ not modelled 46.8 20 PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens 26 d1qz9a_ not modelled 46.4 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 27 c3hbxB_ not modelled 46.1 21 PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana 28 d1elua_ not modelled 45.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 29 c2rmzA_ not modelled 43.2 32 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 30 d1v72a1 not modelled 43.1 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 31 d1t3ia_ not modelled 42.8 9 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 32 d1jf9a_ not modelled 41.4 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 33 c2jo1A_ not modelled 40.3 13 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 34 d1seza2 not modelled 39.8 26 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:L-aminoacid/polyamine oxidase 35 d1oj4a2 not modelled 39.2 14 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE 36 c3ly1C_ not modelled 38.8 14 PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution 37 d2erra1 not modelled 38.4 7 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 38 c3getA_ not modelled 37.9 14 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution 39 c3f9tB_ not modelled 36.9 29 PDB header:lyase Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna; PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution 40 d1ztpa1 not modelled 35.7 8 Fold:eIF4e-like Superfamily:eIF4e-like Family:BLES03-like 41 c3a2bA_ not modelled 35.6 14 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine 42 c2okkA_ not modelled 35.2 13 PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) 43 d2bwna1 not modelled 34.9 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 44 c2huuA_ not modelled 33.6 15 PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine 45 d1eg5a_ not modelled 33.5 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 46 d1nxia_ not modelled 33.2 13 Fold:Ferredoxin-like Superfamily:Hypothetical protein VC0424 Family:Hypothetical protein VC0424 47 c2o01D_ not modelled 32.7 13 PDB header:photosynthesis Chain: D: PDB Molecule:photosystem i reaction center subunit ii, PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 48 c3hqtB_ not modelled 32.4 12 PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa 49 d3erja1 not modelled 30.6 26 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 50 d1x4ea1 not modelled 30.6 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 51 d2gova1 not modelled 30.1 7 Fold:Probable bacterial effector-binding domain Superfamily:Probable bacterial effector-binding domain Family:SOUL heme-binding protein 52 c2w8wA_ not modelled 30.1 15 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser 53 c2k8eA_ not modelled 29.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein yegp; PDBTitle: solution nmr structure of protein of unknown function yegp from e.2 coli. ontario center for structural proteomics target ec0640_1_1233 northeast structural genomics consortium target et102. 54 c2jisA_ not modelled 28.9 15 PDB header:lyase Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase; PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp. 55 c2dh9A_ not modelled 27.6 12 PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m; PDBTitle: solution structure of the c-terminal rna binding domain in2 heterogeneous nuclear ribonucleoprotein m 56 d2f8ja1 not modelled 26.4 21 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 57 d1h0ca_ not modelled 26.1 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 58 c1xtyD_ not modelled 25.8 19 PDB header:hydrolase Chain: D: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna2 hydrolase 59 c3r8kB_ not modelled 25.5 12 PDB header:apoptosis Chain: B: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul protein (hexagonal form) 60 d1rk8a_ not modelled 25.3 9 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 61 d2cpia1 not modelled 23.7 4 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 62 c2hzpA_ not modelled 23.1 11 PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase 63 c3p3dA_ not modelled 22.8 19 PDB header:nuclear protein Chain: A: PDB Molecule:nucleoporin 53; PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii 64 c3bpqD_ not modelled 22.4 31 PDB header:toxin Chain: D: PDB Molecule:toxin rele3; PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii 65 c2zv3E_ not modelled 22.1 23 PDB header:hydrolase Chain: E: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of project mj0051 from methanocaldococcus2 jannaschii dsm 2661 66 c2d3kA_ not modelled 21.9 17 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3 67 c2eqkA_ not modelled 21.9 10 PDB header:transcription Chain: A: PDB Molecule:tudor domain-containing protein 4; PDBTitle: solution structure of the tudor domain of tudor domain-2 containing protein 4 68 d1mdoa_ not modelled 21.9 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 69 c3eucB_ not modelled 21.8 8 PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2; PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution 70 d2c0ra1 not modelled 20.2 7 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 71 c2z0rA_ not modelled 19.7 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha0547; PDBTitle: crystal structure of hypothetical protein ttha0547 72 d1rlka_ not modelled 19.4 28 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 73 c2q5cA_ not modelled 18.7 17 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 74 c2k49A_ not modelled 18.7 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein so_3888; PDBTitle: solution nmr structure of upf0339 protein so3888 from shewanella2 oneidensis. northeast structural genomics consortium target sor190 75 c3ns5B_ not modelled 18.6 18 PDB header:translation Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b; PDBTitle: crystal structure of the rna recognition motif of yeast eif3b residues2 76-161 76 c3hdeA_ not modelled 18.2 14 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme; PDBTitle: crystal structure of full-length endolysin r21 from phage 21 77 d1wi6a1 not modelled 18.1 12 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 78 c1no8A_ not modelled 17.8 11 PDB header:rna binding protein Chain: A: PDB Molecule:aly; PDBTitle: solution structure of the nuclear factor aly rbd domain 79 d1no8a_ not modelled 17.8 11 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 80 c2wseD_ not modelled 17.4 13 PDB header:photosynthesis Chain: D: PDB Molecule:photosystem i reaction center subunit ii, PDBTitle: improved model of plant photosystem i 81 c2jwaA_ not modelled 17.4 25 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 82 c2pbiA_ not modelled 17.3 9 PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signaling 9; PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure 83 c3ml6D_ not modelled 16.8 12 PDB header:protein transport Chain: D: PDB Molecule:chimeric complex between protein dishevlled2 homolog dvl-2 PDBTitle: a complex between dishevlled2 and clathrin adaptor ap-2 84 d1gcca_ not modelled 16.2 6 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:GCC-box binding domain 85 c2divA_ not modelled 16.0 10 PDB header:rna binding protein Chain: A: PDB Molecule:trna selenocysteine associated protein; PDBTitle: solution structure of the rrm domain of trna selenocysteine2 associated protein 86 c3ht4B_ not modelled 16.0 15 PDB header:lyase Chain: B: PDB Molecule:aluminum resistance protein; PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213 87 d1wg1a_ not modelled 15.9 8 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 88 d1q7sa_ not modelled 15.7 19 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 89 c3ffhA_ not modelled 15.6 20 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262. 90 d1jb0d_ not modelled 15.0 10 Fold:Photosystem I subunit PsaD Superfamily:Photosystem I subunit PsaD Family:Photosystem I subunit PsaD 91 c2ordA_ not modelled 15.0 13 PDB header:transferase Chain: A: PDB Molecule:acetylornithine aminotransferase; PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution 92 c3n23E_ not modelled 14.6 24 PDB header:hydrolase Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump 93 d2cqha1 not modelled 14.6 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 94 d2ch1a1 not modelled 14.4 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 95 d2cpea1 not modelled 13.8 8 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 96 c2l9vA_ not modelled 13.8 14 PDB header:rna binding protein Chain: A: PDB Molecule:pre-mrna-processing factor 40 homolog a; PDBTitle: nmr structure of the ff domain l24a mutant's folding transition state 97 d2cpha1 not modelled 13.8 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 98 c3e9kA_ not modelled 13.7 11 PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex 99 d1fxla1 not modelled 13.6 9 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0