|   |
34 | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | V | M | I | L | D | S | G | D | P | N | G | P | L | S | R | A | V | R | N | Q | L | R | L | N | G | V | E | L | L | D | K | E | T | T | R | K | D | V | P | S | L | R | L | G | K | V | S | I | A | K | D | T | A | S | V | F | R | N | G | Q | T | A | E | Y | Q | M | I | M | T | V | N | A | T | V | L | I | P | G | R |
Query Conservation |   |
  |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|
|   |
|
|
|   |   |   |
|   |
|   |
|
|
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |
|   |
|   |   |
|   |
|   |
|   |
|
|   |   |
|   |   |   |
|
|   |
|
|   |   |   |   |   |   | . | . | . |   |   |
|   |
|   |   |   |   |   |   |
|
|   |
|
|
|   |   |   |
|   |
|   |
|
|
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |
Template Sequence |   |
N | Q | L | S | L | S | S | S | D | E | Y | K | E | L | T | R | L | V | R | E | R | L | R | L | N | N | V | K | I | V | D | A | A | N | D | V | . |
. |
. |
P | V | L | R | L | I | T | D | S | L | E | R | S | T | L | S | L | Y | P | T | G | N | V | A | E | Y | E | L | I | Y | F | V | E | F | A | V | A | L | P | G | K |
Template Known Secondary structure |   |
|  |  |  |  |  |  | S |
| T | T | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |
| S | S |
| S | S | S | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|  | . | . | . |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | |
|
|
. | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
  |
  |   |
114 | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | I | Y | P | I | S | A | K | V | F | R | S | F | F | D | N | P | Q | M | A | L | A | K | D | N | E | Q | D | M | I | V | K | E | M | Y | D | R | A | A | E | Q | L | I | R | K | L | P | S | I | R | A | A | D | I | R |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |   |
|   |
|   |   |
|   |   |   |
|
|
|
|   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |
|   |
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|
|   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |
Template Sequence |   |
E | A | Q | P | F | K | I | E | I | R | R | D | Y | L | D | D | P | R | T | A | L | A | K | S | R | E | X | E | L | L | V | K | E | X | R | I | Q | A | A | D | R | I | L | Q | S | X | A | S | T | E | V | N | L | E | H |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
113 | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . |
  |