Job Description P0AGG8 Confidence 100.00% Date Thu Jan 5 11:29:05 GMT 2012 Rank 2 Aligned Residues 431 % Identity 21% Template d1vpba_ SCOP info Putative modulator of DNA gyrase, PmbA/TldD Putative modulator of DNA gyrase, PmbA/TldD Putative modulator of DNA gyrase, PmbA/TldD Resolution 1.75

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	S	E	Q	L	L	A	A	N	G	L	K	H	Q	D	L	F	A	I	L	G	Q	L	A	E	R	R	L	D	Y	G	D	L	Y	F	Q	S	S	Y	H	E	S	W	V	L	E	D	R	I	I	K	D	G	S	Y	N	I	D	Q	G	V	G	V	R	A	I	S	G	E	K	T	G	F	A	Y	A	D	Q	I
Query Conservation
Alig confidence												.	.	.	.	.	.	.																																.	.
Template Conservation												.	.	.	.	.	.	.																																.	.
Template Sequence		M	I	T	D	E	N	K	K	L	A	.	.	.	.	.	.	.	Q	W	A	M	D	Y	A	L	K	N	G	C	Q	A	A	K	V	L	L	Y	S	S	S	N	T	S	F	E	L	R	D	.	.	M	D	R	L	Q	Q	A	S	E	G	G	L	S	L	S	L	Y	V	D	G	R	Y	G	S	I	S	T	N	R	L
Template Known Secondary structure												.	.	.	.	.	.	.										T	T		S																			.	.																			T	T								S
Template Predicted Secondary structure												.	.	.	.	.	.	.																																.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10								.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.							120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.
Query Sequence		S	L	L	A	L	E	Q	S	A	Q	A	A	R	T	I	V	R	D	S	G	D	G	K	V	Q	T	L	G	A	V	E	H	S	P	L	.	.	.	.	.	.	Y	T	S	V	D	P	L	Q	S	M	S	R	E	E	K	L	D	I	L	R	R	V	D	K	V	A	R	E	A	D	K	R	V	Q	E	V	T	A	S
Query Conservation																																					.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.
Template Conservation
Template Sequence		N	R	K	E	L	E	T	F	I	K	N	G	I	D	S	T	R	Y	L	A	K	D	E	A	R	V	L	A	D	P	S	R	Y	Y	K	G	G	K	P	D	L	K	L	Y	D	A	K	F	A	S	L	N	P	D	D	K	I	E	M	A	K	A	V	A	E	E	A	L	G	K	D	E	R	I	I	S	V	G	S	S
Template Known Secondary structure																		T	T	S				T	T						G	G	G	B			S								S		T	T	G	G	G																T	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	V	Y	E	L	I	L	V	A	A	T	D	G	T	L	A	A	D	V	R	P	L	V	R	L	S	V	S	V	L	V	E	E	D	G	K	R	E	R	G	A	S	G	G	G	G	R	F	G	Y	E	F	F	L	A	D	L	D	G	E	V	R	A	D	A	W	A	K	E	A	V	R	M	A	L	V	N	L
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.
Template Sequence		Y	G	D	G	E	D	F	A	Y	R	L	I	S	N	G	F	E	G	E	T	K	S	T	W	Y	S	L	S	A	D	I	T	I	R	G	E	G	E	A	.	.	.	.	.	.	.	.	R	P	S	A	Y	W	Y	E	S	S	L	Y	M	N	D	L	I	K	K	G	I	G	Q	K	A	L	E	R	V	L	R	K	L
Template Known Secondary structure														T	T	T																					S	T	T		.	.	.	.	.	.	.	.											S	S	G	G	G	S			S	S											T	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.									.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	V	A	A	P	A	G	T	M	P	V	V	L	G	A	G	W	P	G	V	L	L	H	E	A	V	G	H	G	L	E	G	D	F	N	R	R	G	T	S	V	F	S	G	Q	V	G	E	L	V	A	S	E	L	C	T	V	V	D	D	G	T	M	V	D	R	R	G	S	V	A	I	D	D	E	G	T	P	G
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		G	Q	K	K	V	Q	S	G	K	Y	T	M	V	V	D	P	M	N	S	S	R	L	L	S	P	M	I	S	A	.	L	N	G	S	A	L	Q	Q	K	N	S	F	L	L	N	K	L	N	E	K	I	A	S	D	R	L	T	L	T	D	E	P	H	L	V	K	A	S	G	A	R	Y	F	D	N	E	G	I	A	T
Template Known Secondary structure		T		B													T	T	T											T	.	T	B						T	T			T	T	T	T		T	T	S	B		S		T	T							T	T		T	T		T	T			S	B		T	T		B	B
Template Predicted Secondary structure																															.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	N	V	L	I	E	N	G	I	L	K	G	Y	M	Q	D	K	L	N	A	R	L	M	G	M	T	P	T	G	N	G	R	R	E	S	Y	A	H	L	P	M	P	R	M	T	N	T	Y	M	L	P	G	K	S	T	P	Q	E	I	I	E	S	V	E	Y	G	I	Y	A	P	N	F	G	G	G	Q	V	D	I
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	R	R	S	I	F	D	K	G	V	L	N	T	Y	F	I	D	T	Y	N	A	K	K	M	G	V	D	P	T	I	S	G	S	S	.	.	.	.	.	.	.	.	.	.	.	.	I	L	V	M	E	T	G	D	K	N	L	D	G	L	I	A	G	V	E	K	G	I	L	V	T	G	F	N	G	G	N	N	N	S
Template Known Secondary structure									T	T						B										T	S					S	S		S	.	.	.	.	.	.	.	.	.	.	.	.								S									T		S															T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.													.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	G	K	F	V	F	S	T	S	E	A	Y	L	I	E	N	G	K	V	T	K	P	V	K	G	A	T	L	I	G	S	G	I	E	T	M	Q	Q	I	S	M	V	G	N	D	L	K	L	D	N	G	V	G	V	C	G	K	E	G	Q	S	L	P	V	G	V	G	Q	P	T	L	K	V	D	N	L	T	V	G
Query Conservation
Alig confidence												.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	G	D	F	S	Y	G	I	E	.	G	F	L	I	E	N	G	K	L	T	Q	P	V	S	E	M	N	V	T	G	N	L	I	T	L	W	N	S	L	V	A	T	G	N	D	P	R	L	N	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	R	I	P	S	L	V	F	E	G	V	D	F	S
Template Known Secondary structure		T	T									.						T	T																					T						S				T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		373	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.															.	.	.	.	.	.	430	.	.	.	.	.	.	.
		479	480
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		438	.