Job Description P0AGG8 Confidence 100.00% Date Thu Jan 5 11:29:05 GMT 2012 Rank 3 Aligned Residues 424 % Identity 20% Template d1vl4a_ SCOP info Putative modulator of DNA gyrase, PmbA/TldD Putative modulator of DNA gyrase, PmbA/TldD Putative modulator of DNA gyrase, PmbA/TldD Resolution 1.95

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	D	L	F	A	I	L	G	Q	L	A	E	R	R	L	D	Y	G	D	L	Y	F	Q	S	S	Y	H	E	S	W	V	L	E	D	R	I	I	K	D	G	S	Y	N	I	D	Q	G	V	G	V	R	A	I	S	G	E	K	T	G	F	A	Y	A	D	Q	I	S	L	L	A	L	E	Q	S	A	Q	A	A	R
Query Conservation
Alig confidence																		.																																																					.	.
Template Conservation																		.																																																					.	.
Template Sequence		E	E	F	K	D	R	L	F	A	L	A	K	K	N	G	V	.	E	V	Q	I	S	F	L	E	T	R	E	F	S	L	R	L	A	N	G	D	L	D	Q	Y	T	D	A	G	K	F	N	V	E	I	K	V	L	K	D	G	K	T	G	T	F	R	T	Q	V	L	E	N	.	.	P	E	K	C	F	E	E	A	L
Template Known Secondary structure																T		.																		T	T																				T	T								S	S				.	.
Template Predicted Secondary structure																		.																																																					.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	V	R	D	S	G	D	G	K	V	Q	T	L	G	A	V	E	H	S	P	L	Y	T	S	V	D	P	L	Q	S	M	S	R	E	E	K	L	D	I	L	R	R	V	D	K	V	A	R	E	A	D	K	R	V	Q	E	V	T	A	S	L	S	G	V	Y	E	L	I	L	V	A	A	T	D	G	T	L	A	A
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		S	N	L	Q	V	K	K	E	Y	F	F	E	G	G	K	E	Y	R	E	M	E	.	.	T	Y	V	G	R	F	E	K	L	S	V	K	E	K	M	D	M	A	K	K	A	H	E	S	A	A	K	D	E	R	V	V	M	V	P	T	V	M	Y	K	D	M	V	I	K	K	I	I	T	N	T	L	G	L	D	V	E
Template Known Secondary structure			G	G	G									S									.	.						G	G	G	S																			S	T	T																					T	T	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	R	P	L	V	R	L	S	V	S	V	L	V	E	E	D	G	K	R	E	R	G	A	S	G	G	G	G	R	F	G	Y	E	F	F	L	A	D	L	D	G	E	V	R	A	D	A	W	A	K	E	A	V	R	M	A	L	V	N	L	S	A	V	A	A	P	A	G	T	M	P	V	V	L	G	A	G	W	P
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	M	D	G	G	F	L	F	A	M	A	I	A	R	D	A	N	P	.	.	.	.	.	.	.	.	.	.	R	S	G	S	W	Y	E	L	A	R	T	P	E	D	L	N	P	E	E	I	G	K	R	A	A	E	E	A	I	S	L	I	G	S	K	T	I	P	S	G	K	Y	P	V	L	M	R	N	T	A	L
Template Known Secondary structure																	S	S	S		.	.	.	.	.	.	.	.	.	.										S	S	G	G	G																	T	T	T		B				S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	L	L	H	E	A	V	G	H	G	L	E	G	D	F	N	R	R	G	T	S	V	F	S	G	Q	V	G	E	L	V	A	S	E	L	C	T	V	V	D	D	G	T	M	V	D	R	R	G	S	V	A	I	D	D	E	G	T	P	G	Q	Y	N	V	L	I	E	N	G	I	L	K	G	Y	M	Q	D	K	L
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		L	D	L	M	.	E	M	F	I	P	M	I	S	A	E	N	V	Q	K	N	L	S	P	L	K	G	K	L	G	E	Q	V	G	N	P	A	V	S	I	K	D	L	P	Y	H	P	K	G	L	S	S	T	P	F	D	D	E	G	V	P	T	T	E	K	F	V	L	E	N	G	V	L	K	T	F	L	H	N	L	K
Template Known Secondary structure					G	.	G	G	G					B						T	T			T	T	T	T		T	T	S	B		S		T	T							S			T	T		T	T			S	B		T	T	S		B									T	T						B
Template Predicted Secondary structure						.
Template SS confidence
		233	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.			.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		N	A	R	L	M	G	M	T	P	T	G	N	G	R	R	E	S	Y	A	H	L	P	M	P	R	M	T	N	T	Y	M	L	P	G	K	S	T	P	Q	E	I	I	E	S	V	E	Y	G	I	Y	A	P	N	F	G	G	G	Q	.	.	V	D	I	T	S	G	K	F	V	F	S	T	S	E	A	Y	L	I	E	N
Query Conservation																																																												.	.
Alig confidence																	.	.	.	.	.	.																																						.	.														.
Template Conservation																	.	.	.	.	.	.																																																					.
Template Sequence		T	A	R	K	E	G	V	E	P	T	G	N	G	F	V	.	.	.	.	.	.	G	G	I	R	P	V	N	L	M	L	M	P	G	E	K	S	F	E	E	L	L	K	E	M	D	R	G	V	V	I	T	E	V	E	G	M	H	A	G	A	N	S	I	S	G	E	F	S	L	F	A	K	.	G	Y	W	V	E	N
Template Known Secondary structure							T					S				T	.	.	.	.	.	.	T					S								S	B											S														B		T	T	T									.						T
Template Predicted Secondary structure																	.	.	.	.	.	.																																																					.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.							.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	V	T	K	P	V	K	G	A	T	L	I	G	S	G	I	E	T	M	Q	Q	I	S	M	V	G	N	D	L	K	L	D	N	G	V	G	V	C	G	K	E	G	Q	S	L	P	V	G	V	G	Q	P	T	L	K	V	D	N	L	T	V	G
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	I	A	H	G	V	E	D	I	T	I	S	G	N	F	L	D	L	L	R	K	I	V	L	V	G	N	D	V	K	V	S	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	A	P	S	V	L	V	E	V	L	D	V	A
Template Known Secondary structure		T																					T					B	S						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.															420	.	.	.	.	.	.	.	.	.	430	.	.	.