Job Description P0AGG8 Confidence 100.00% Date Thu Jan 5 11:29:05 GMT 2012 Rank 1 Aligned Residues 429 % Identity 21% Template c3qtdC_ PDB info PDB header:gene regulation Chain: C: PDB Molecule:pmba protein; PDBTitle: crystal structure of putative modulator of gyrase (pmba) from2 pseudomonas aeruginosa pao1 Resolution 2.70 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	D	L	F	A	I	L	G	Q	L	A	E	R	R	L	D	Y	G	D	L	Y	F	Q	S	S	Y	H	E	S	W	V	L	E	D	R	I	I	K	D	G	S	Y	N	I	D	Q	G	V	G	V	R	A	I	S	G	E	K	T	G	F	A	Y	A	D	Q	I	S	L	L	A	L	E	Q	S	A	Q	A	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	Q	V	E	Q	I	I	A	E	A	R	R	Q	G	A	S	A	C	E	V	A	V	S	L	E	Q	G	L	S	T	S	V	R	Q	G	E	V	E	T	V	E	F	N	R	D	Q	G	F	G	I	T	L	Y	A	G	Q	R	K	G	S	A	S	T	S	A	T	G	E	A	A	I	R	E	T	V	A	A	A	L
Template Known Secondary structure															T	T		S																		T	T																				T	T								S			S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																													.	.	.																																.
Query SS confidence																													.	.	.																																.
Query Sequence		T	I	V	R	D	S	G	D	G	K	V	Q	T	L	G	A	V	E	H	S	P	L	Y	T	S	V	D	.	.	.	P	L	Q	S	M	S	R	E	E	K	L	D	I	L	R	R	V	D	K	V	A	R	E	A	D	K	R	V	Q	E	V	.	T	A	S	L	S	G	V	Y	E	L	I	L	V	A	A	T	D	G
Query Conservation																													.	.	.																																.
Alig confidence																													.	.	.																																.
Template Conservation
Template Sequence		A	I	A	R	H	T	S	E	D	E	C	A	G	L	A	D	A	A	L	X	A	R	E	L	P	E	L	D	L	Y	H	P	W	S	L	S	P	E	Q	A	V	E	R	A	L	A	C	E	A	A	A	F	A	A	D	K	R	V	T	K	A	D	G	T	T	L	N	T	H	Q	G	C	R	V	Y	G	N	S	H	G
Template Known Secondary structure							S				T	T		S				G	G	G	B		S																																		T	T																					T	T	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	A	A	D	V	R	P	L	V	R	L	S	V	S	V	L	V	E	E	D	G	K	R	E	R	G	A	S	G	G	G	G	R	F	G	Y	E	F	F	L	A	D	L	D	G	E	V	R	A	D	A	W	A	K	E	A	V	R	M	A	L	V	N	L	S	A	V	A	A	P	A	G	T	M	P	V	V	L	G
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.
Template Sequence		F	I	G	G	Y	A	S	T	R	H	S	L	S	C	V	X	I	A	E	G	E	G	Q	X	Q	R	D	Y	W	Y	D	V	N	R	R	G	E	A	.	.	.	.	.	.	.	.	L	A	S	A	E	S	I	G	R	R	A	A	E	R	A	A	S	R	L	G	A	R	P	V	Q	T	A	E	V	P	V	L	F	A
Template Known Secondary structure																						T	T												S	S	G	G	G	.	.	.	.	.	.	.	.	S																	T	T	T		B
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.									.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	W	P	G	V	L	L	H	E	A	V	G	H	G	L	E	G	D	F	N	R	R	G	T	S	V	F	S	G	Q	V	G	E	L	V	A	S	E	L	C	T	V	V	D	D	G	T	M	V	D	R	R	G	S	V	A	I	D	D	E	G	T	P	G	Q	Y	N	V	L	I	E	N	G	I	L	K	G	Y	M
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		P	E	I	A	V	G	L	F	G	H	F	L	G	A	.	I	S	G	G	S	L	Y	R	K	S	S	F	L	E	G	A	L	G	Q	R	L	F	P	E	W	L	S	I	D	E	R	P	H	L	V	G	A	L	G	S	A	S	F	D	S	D	G	L	A	T	Y	A	K	P	F	V	E	N	G	E	L	V	S	Y	V
Template Known Secondary structure																.	T	B						T	T			T	T	T	T		T	T	S	B		S		T	T							T	T		T	T		T	T			S	B		T	T		B	B									T	T						B
Template Predicted Secondary structure																.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	K	L	N	A	R	L	M	G	M	T	P	T	G	N	G	R	R	E	S	Y	A	H	L	P	M	P	R	M	T	N	T	Y	M	L	P	G	K	S	T	P	Q	E	I	I	E	S	V	E	Y	G	I	Y	A	P	N	F	G	G	G	Q	V	D	I	T	S	G	K	F	V	F	S	T	S	E	A	Y	L	I
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.																																																	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																																																	.
Template Sequence		L	G	T	Y	S	G	R	K	L	G	L	P	S	T	A	N	A	.	.	.	.	.	.	.	.	.	.	G	G	V	H	N	L	F	V	S	H	G	D	E	D	Q	A	A	L	I	R	R	X	E	R	G	L	L	V	T	E	L	X	G	Q	G	V	N	L	V	T	G	D	Y	S	R	G	A	A	.	G	Y	W	V
Template Known Secondary structure											T					S		T	.	.	.	.	.	.	.	.	.	.	T			S	S							S												S									S	S				T	T	T	T								.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																																																	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.											.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	G	K	V	T	K	P	V	K	G	A	T	L	I	G	S	G	I	E	T	M	Q	Q	I	S	M	V	G	N	D	L	K	L	D	N	G	V	G	V	C	G	K	E	G	Q	S	L	P	V	G	V	G	Q	P	T	L	K	V	D	N	L	T	V	G	G	T
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	G	E	I	Q	F	P	V	Q	E	V	T	I	A	A	N	L	R	D	L	F	R	R	I	V	A	V	G	K	D	I	E	R	R	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	T	G	S	V	L	V	E	S	X	X	V	A	G	R
Template Known Secondary structure			T	T																					T						S					S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.															.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.