Job Description P0AGG8 Confidence 8.88% Date Thu Jan 5 11:29:05 GMT 2012 Rank 28 Aligned Residues 97 % Identity 12% Template c3ezjA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein gspd; PDBTitle: crystal structure of the n-terminal domain of the secretin gspd from2 etec determined with the assistance of a nanobody Resolution 2.80 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																														.																																.	.
Query SS confidence																														.																																.	.
Query Sequence		H	E	S	W	V	L	E	D	R	I	I	K	D	G	S	Y	N	I	D	Q	G	V	G	V	R	A	I	S	.	G	E	K	T	G	F	A	Y	A	D	Q	I	S	L	L	A	L	E	Q	S	A	Q	A	A	R	T	I	V	R	D	S	.	.	G	D	G	K	V	Q	T	L	G	A	V	E	H	S	P	L	Y	T
Query Conservation																														.																																.	.
Alig confidence																														.																																.	.
Template Conservation
Template Sequence		T	F	T	A	N	F	K	D	T	D	L	K	S	F	I	E	T	V	G	A	N	L	N	K	T	I	I	M	V	Q	G	A	V	S	I	R	T	M	T	P	L	N	E	R	Q	Y	Y	Q	L	F	L	N	L	L	E	A	Q	G	Y	A	V	V	P	M	E	N	D	V	L	K	V	V	K	S	G	D	E	M	V	T
Template Known Secondary structure			B																					T															S	S		B																T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	D	P	L	Q	S	M	S	R	E	E	K	L	D	I	L	R	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	V	P	V	R	N	V	S	V	R	E	L	A	P	I	L	R	Q	M
Template Known Secondary structure								S	S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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