Job Description P76562 Confidence 97.96% Date Thu Jan 5 12:24:40 GMT 2012 Rank 100 Aligned Residues 108 % Identity 27% Template c3llmB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.									.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	Q	L	L	K	Q	L	M	T	M	P	P	G	V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	.	.	.	.	.	.	.	.	I	A	G	R	A	I	V	T	A	P	A	K	A	S	T	D	V	L	A	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																									.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.
Template Sequence		E	S	E	I	L	E	A	I	S	Q	.	.	N	S	V	V	I	I	R	G	A	T	G	C	G	K	T	T	Q	V	P	Q	F	I	L	D	D	F	I	Q	N	D	R	A	A	E	C	N	I	V	V	T	Q	P	R	R	I	S	A	V	S	V	A	E	R	V	A	F	E	R	G	E	E	P	G	K	S	C	G	Y
Template Known Secondary structure												.	.		S								T	T	S	S																T	T		G	G	G								S	S														T	T	T			T	T	S	S
Template Predicted Secondary structure												.	.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.			.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
												237	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.							.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.															.	.	.	.															.	.	.	.	.	.																	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.															.	.	.	.															.	.	.	.	.	.																	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	G	E	K	F	R	F	I	A	P	D	A	L	L	.	.	.	.	A	S	D	E	Q	A	D	W	L	V	V	D	E	A	.	.	.	.	.	.	A	A	I	P	A	P	L	L	H	Q	L	V	S	R	F	P	.	.	.	R	T	L	L	T	T	T	V	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.															.	.	.	.															.	.	.	.	.	.																	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.															.	.	.	.															.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		S	V	R	F	E	S	I	L	P	R	P	H	A	S	I	X	F	C	T	V	G	V	L	L	R	K	L	E	A	G	I	R	G	I	S	H	V	I	V	D	E	I	H	E	R	D	I	N	T	D	F	L	L	V	V	L	R	D	V	V	Q	A	Y	P	E	V	R	I	V	L	X	S	A	T	I	D
Template Known Secondary structure				T	T							S	S	S																			T	T									T	T	S																				T	T	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions