Job Description P76562 Confidence 97.49% Date Thu Jan 5 12:24:40 GMT 2012 Rank 124 Aligned Residues 142 % Identity 18% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.
Query SS confidence																																																																							.	.	.
Query Sequence		A	I	L	W	R	Q	N	Q	P	F	S	L	A	H	F	T	P	R	T	D	W	Y	P	A	T	G	A	P	Q	P	E	Q	Q	Q	L	L	K	Q	L	M	T	M	P	P	G	V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	.	.	.	G	R	A	I	V	T	A	P
Query Conservation																																																																							.	.	.
Alig confidence																																									.	.																													.	.	.
Template Conservation																																									.	.
Template Sequence		V	A	L	P	P	N	Y	D	Y	T	P	I	A	E	H	K	R	V	N	E	A	R	T	Y	P	F	T	L	D	P	F	Q	D	T	A	I	S	C	I	.	.	D	R	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	P
Template Known Secondary structure					S	S				S	S	T	T	T	T	T				S		S	S			S	S														.	.	T	T	T									S	S	S																T	T								S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		226	.	.	.	230	.	.	.	.	.	.																			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.								.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270									.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Query Sequence		A	K	A	S	T	D	V	L	A	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	E	K	F	R	F	I	A	P	D	A	L	L	A	S	D	E	.	.	.	.	.	.	.	Q	A	D	W	L	V	V	D	E	A	A	A	I	P	A	P	.	.	.	.	.	.	.	.	L	L
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M	T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	W	E	E	T	I
Template Known Secondary structure		S															T	S	S						S	S		B				S		S																	S	S												T	G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	L	V	S	R	F	P	R	T	L	L	T	T	T	V	Q	G	Y	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	L	P	D	K	V	R	Y	V	F	L	S	A	T	I	P	N	A	M
Template Known Secondary structure				S		T	T	S								S		S	S
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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