Job Description P76562 Confidence 96.38% Date Thu Jan 5 12:24:40 GMT 2012 Rank 164 Aligned Residues 112 % Identity 20% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

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		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.															.
Predicted Secondary structure																																														.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	P	E	Q	Q	Q	L	L	K	Q	L	M	T	M	P	P	G	V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	G	R	.	.	.	.	A	I	V	T	A	P	A	K	A	S	T	D	V	L	A	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Query Conservation																																														.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.																													.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.
Template Sequence		P	T	P	I	Q	S	Q	A	W	P	I	I	L	Q	.	.	G	I	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G	P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E	C	S	K	Y	S	Y	K	G	L	K	S	I	C	I	Y
Template Known Secondary structure															T	.	.	T									T	T	S															T					S						S	S																	T	T
Template Predicted Secondary structure																.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		238	.	240	.	.	.	.	.	.	.	.	.	250								.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.									270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query Sequence		G	E	K	F	R	F	I	A	P	D	A	L	L	.	.	.	.	.	.	.	A	S	D	E	Q	A	D	W	L	V	V	D	E	A	A	A	I	P	A	.	.	.	.	.	.	.	.	P	L	L	H	Q	L	V	S	R	F	P	R	T	L	L	T	T	T	V	Q
Query Conservation															.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	D	I	I	I	A	T	P	G	R	L	N	D	L	Q	M	N	N	S	V	N	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	L	D	M	E	F	E	P	Q	I	R	K	I	L	L	D	V	R	P	D	R	Q	T	V	M	T	S	A	T	W	P
Template Known Secondary structure				S															T	T		S			T	T															T	T												S		S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions