Job Description P76562 Confidence 89.89% Date Thu Jan 5 12:24:40 GMT 2012 Rank 240 Aligned Residues 135 % Identity 18% Template c3fmoB_ PDB info PDB header:oncoprotein/hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of the nucleoporin nup214 in complex with the dead-2 box helicase ddx19 Resolution 2.51 Å

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		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	P	E	Q	Q	Q	L	L	K	Q	L	M	T	M	P	P	G	V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	G	.	.	.	.	.	.	R	A	I	V	T	A	P	A	K	A	S	T	D	V	L	A	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	K	I	Q	E	N	A	L	P	L	M	L	A	E	P	P	Q	N	L	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	V	L	A	M	L	S	Q	V	E	P	A	N	K	Y	P	Q	C	L	C	L	S	P	T	Y	E	L	A	L	Q	T	G	K	V	I	E	Q	M	G	K	F	Y	P	E	L	K	L
Template Known Secondary structure														T	S	S	S										T	T	S	S															T	T	S		S								S	S															T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
																237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.									.	.	.	.	.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.	.	.	280					.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																.	.	.	.	.												.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																.	.	.	.	.												.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	E	K	F	R	F	I	A	P	D	A	L	L	A	S	D	E	.	.	.	.	.	.	.	.	Q	A	D	W	L	V	V	D	E	A	A	A	I	P	A	.	.	.	.	.	P	L	L	H	Q	L	V	S	R	F	P	.	.	.	.	R	T	L	L	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																.	.	.	.	.												.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																.	.	.	.	.												.	.	.	.
Template Conservation
Template Sequence		A	Y	A	V	R	G	N	K	L	E	R	G	Q	K	I	S	E	Q	I	V	I	G	T	P	G	T	V	L	D	W	C	S	K	L	K	F	I	D	P	K	K	I	K	V	F	V	L	D	E	A	D	V	M	I	A	T	Q	G	H	Q	D	Q	S	I	R	I	Q	R	M	L	P	R	N	C	Q	M	L	L	F	S
Template Known Secondary structure					S	T	T					T	T						S														T	T	T					G	G	G		S					T	T							S	T	T										T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	V	Q	G	Y	E	G	T	G	R	G	F	L	L	K	F	C	A	R	F	P	H	L	H	R	F	E	L	Q	Q
Query Conservation
Alig confidence					.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.
Template Sequence		A	T	F	.	.	.	.	.	.	E	D	S	V	W	K	F	A	Q	K	V	V	P	D	P	N	V	I	K	L	K	R
Template Known Secondary structure		S			.	.	.	.	.	.												S	S	S
Template Predicted Secondary structure					.	.	.	.	.	.
Template SS confidence
		275	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions