Job Description P76562 Confidence 35.78% Date Thu Jan 5 12:24:40 GMT 2012 Rank 417 Aligned Residues 107 % Identity 18% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		179	180	.	.	.	.	.	.	.	.														.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	Q	Q	L	L	K	Q	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	T	M	P	P	G	V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	G	R	A	I	V	T	A	P	A	K	A	S	T	D	V	L	A	Q	F	A	G	E	K	F	R	F	I	A
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	S	T	F	F	S	V	S	S	.	.	.	.	S	D	L	V	S	K	W	M	G	E	S	E	K	L	V	K
Template Known Secondary structure												T						G	G	G			T	T												S	T	T	S												T	T	T									.	.	.	.				T	T	T	S	S	S	S		T	T	T
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.												.	.	270	.	.	.	.	.	.	.									.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query Sequence		P	D	A	L	L	A	S	D	E	Q	A	D	W	L	V	V	D	E	A	A	A	I	.	.	.	.	.	.	.	.	.	.	.	P	A	P	L	L	H	Q	L	V	S	.	.	.	.	.	.	.	.	R	F	P	R	T	L	L	T	T	T	V	Q
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	F	A	M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	G	V	G	N	D	S	Q	G	V	L	V	L	G	A	T	N	I
Template Known Secondary structure									T	T	S	S							S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	S	T	T	T	T	S		S								S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions