Job Description P76562 Confidence 76.55% Date Thu Jan 5 12:24:40 GMT 2012 Rank 289 Aligned Residues 87 % Identity 17% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.							.	.	.	.	250	.
Predicted Secondary structure																																	.	.	.	.								.	.														.							.	.	.	.	.	.							.	.	.	.
Query SS confidence																																	.	.	.	.								.	.														.							.	.	.	.	.	.							.	.	.	.
Query Sequence		T	M	P	P	G	V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	G	R	.	.	.	.	A	I	V	T	A	P	A	.	.	K	A	S	T	D	V	L	A	Q	F	A	G	E	.	K	F	R	F	I	A	.	.	.	.	.	.	P	D	A	L	L	A	.	.	.	.
Query Conservation																																	.	.	.	.								.	.														.							.	.	.	.	.	.							.	.	.	.
Alig confidence																																	.	.	.	.								.	.														.							.	.	.	.	.	.							.	.	.	.
Template Conservation
Template Sequence		K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D
Template Known Secondary structure			S	S	S									T	T	S	S														T	T	T											S	S	T											G	G	G	T							T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
				252	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure		.	.															.	.
Query SS confidence		.	.															.	.
Query Sequence		.	.	S	D	E	Q	A	D	W	L	V	V	D	E	A	A	.	.	A	I	P	A	P	L	L	H	Q	L
Query Conservation		.	.															.	.
Alig confidence		.	.															.	.
Template Conservation
Template Sequence		Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M
Template Known Secondary structure						T	T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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