Job Description P76562 Confidence 96.94% Date Thu Jan 5 12:24:40 GMT 2012 Rank 147 Aligned Residues 168 % Identity 19% Template c2pjrF_ PDB info PDB header:hydrolase/dna Chain: F: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex Resolution 2.90 Å

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		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.								.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	P	E	Q	Q	Q	L	L	K	Q	L	M	T	M	P	P	G	V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	G	.	.	.	.	.	.	.	R	A	I	V	T	A	P	A	K	A	S	T	D	V	L	A	Q	F	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.																															.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		L	N	K	E	Q	Q	E	A	V	.	.	.	.	R	T	T	E	G	P	L	L	I	M	A	G	A	G	S	G	K	T	R	V	L	T	H	R	I	A	Y	L	M	A	E	K	H	V	A	P	W	N	I	L	A	I	T	F	T	N	K	A	A	R	E	M	R	E	R	V	Q	S	L	L	G	G	A	A	E	D	V
Template Known Secondary structure		S									.	.	.	.				S	S								T	T	S									T					T	T	T	S				G	G	G						S						T							T	T	T	S		T	T	S	T	T	S
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		712	.	.	.	.	.	.	.	720					.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	I	S	T	F	H	S	M	C	V	R	I	L	R	R	D	I	D	R	I	G	I	N	R	N	F	S	I	L	D	P	T	D	Q	L	S	V	M	K	T	I	L	K	E	K	N	I	D	P	K	K	F	E	P	R	T	I	L	G	T	I	S	A	A	K	N	E	L	L	P	P	E	Q	F	A	K	R	A	S	T
Template Known Secondary structure																		G	G	G	G	T			T	T																		T	T	S			S	S	S	S	S														T	T	T									S			S
Template Predicted Secondary structure
Template SS confidence
		788	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.
																				237	.	.	240	.	.	.	.													.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	E	K	F	R	F	I	.	.	.	.	.	.	.	.	.	.	.	.	A	P	D	A	L	L	A	S	D	E	Q	A	D	W	L	V	V	D	E	A	A	A	I	P	A	P	L	.	.	.	L	H	Q	L	V	S	R	F	P	R	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation
Template Sequence		Y	Y	E	K	V	V	S	D	V	Y	Q	E	Y	Q	Q	R	L	L	R	N	H	S	L	D	F	D	D	L	I	M	T	T	I	Q	L	F	D	R	V	P	D	V	L	H	Y	Y	Q	Y	K	F	Q	Y	I	H	I	D	E	Y	Q	D	T	N	R	A	Q	Y	T	L	V	K	K	L	A	E	R	F	Q	N	I	C
Template Known Secondary structure		S																			T	T																		S												S					S		G	G	G		B											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		868	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.
		284	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		L	T	T	T	.	.	.	.	V	Q	G	Y	E	G	T	G	R	G	F	L	L	K	F	C	A	R	F	P	H	L	H	R	F	E	L	Q	Q	P	I	R	W	A	Q	G	C	P	L	E	K	M	V	S	E	A	L	V	F	D	D	E	N	F	T	H	T	P	Q	G	N	I
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																															.	.
Template Conservation																																								.	.
Template Sequence		A	V	G	D	A	D	Q	S	I	Y	R	W	R	G	A	D	I	Q	N	I	L	S	F	E	R	D	Y	P	N	A	K	V	I	L	L	E	Q	N	.	.	Y	R	S	T	K	R	I	L	Q	A	A	N	E	V	I	E	H	N	V	N	R	K	P	K	R	I	W	T	E	N
Template Known Secondary structure						G	G	G				T	T	T	T	B		T					T						T	T										.	.	S	S	S													T	T		S	S	S								S	S
Template Predicted Secondary structure																																								.	.
Template SS confidence
		948	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.			.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions