Job Description P76562 Confidence 73.85% Date Thu Jan 5 12:24:40 GMT 2012 Rank 295 Aligned Residues 74 % Identity 27% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.							.	.	.	.	250	.	.
Predicted Secondary structure																															.	.	.	.	.							.	.															.							.	.	.	.	.	.								.	.	.	.
Query SS confidence																															.	.	.	.	.							.	.															.							.	.	.	.	.	.								.	.	.	.
Query Sequence		P	P	G	V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	G	R	.	.	.	.	.	A	I	V	T	A	P	.	.	A	K	A	S	T	D	V	L	A	Q	F	A	G	E	.	K	F	R	F	I	A	.	.	.	.	.	.	P	D	A	L	L	A	S	.	.	.	.
Query Conservation																															.	.	.	.	.							.	.															.							.	.	.	.	.	.								.	.	.	.
Alig confidence																															.	.	.	.	.							.	.															.							.	.	.	.	.	.								.	.	.	.
Template Conservation
Template Sequence		P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E
Template Known Secondary structure		S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
				253	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	D	E	Q	A	D	W	L	V	V	D	E	A
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		A	K	L	K	F	Y	D	V	L	L	V	D	T	A
Template Known Secondary structure					T	T		S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions