Job Description P76562 Confidence 68.62% Date Thu Jan 5 12:24:40 GMT 2012 Rank 312 Aligned Residues 84 % Identity 26% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.							.	.	.	.	250	.	.
Predicted Secondary structure																														.	.	.	.						.	.																.							.	.	.	.	.	.								.	.	.	.	.	.
Query SS confidence																														.	.	.	.						.	.																.							.	.	.	.	.	.								.	.	.	.	.	.
Query Sequence		P	G	V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	G	R	.	.	.	.	A	I	V	T	A	.	.	P	A	K	A	S	T	D	V	L	A	Q	F	A	G	E	.	K	F	R	F	I	A	.	.	.	.	.	.	P	D	A	L	L	A	S	.	.	.	.	.	.
Query Conservation																														.	.	.	.						.	.																.							.	.	.	.	.	.								.	.	.	.	.	.
Alig confidence																														.	.	.	.						.	.																.							.	.	.	.	.	.								.	.	.	.	.	.
Template Conservation
Template Sequence		R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R
Template Known Secondary structure		S									T	T	S	S															T	T										S	S																T								T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		D	E	Q	A	D	W	L	V	V	D	E	A	A	.	.	A	I	P	A	P	L	L	H	Q	L
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L
Template Known Secondary structure				T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions