 |
Job Description | P76562 | Confidence | 88.17% | Date | Thu Jan 5 12:24:40 GMT 2012 |
Rank | 251 | Aligned Residues | 58 |
% Identity | 19% | Template | c2db3D_ |
PDB info |
PDB header:hydrolase/rna | Chain: D: PDB Molecule:atp-dependent rna helicase vasa; |
PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa
|
Resolution | 2.20 Å |
|
 |
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | Q | P | E | Q | Q | Q | L | L | K | Q | L | M | T | M | P | P | G | V | A | A | V | T | A | A | R | G | R | G | K | S | A | L | A | G | Q | L | I | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | I | A | G | R | A | I | V | T | A | P | A | K | A | S | T | D | V | L | A | Q |
Query Conservation |   |
  |
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
| . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
|   |
|
|
|
|   |   |   |
|
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |
|
|   |   |   |
|   |
|   |   | . | . |
|
|
|   |
|
|
|
|
|
|
|
|
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |
|   |   |   |
Template Sequence |   |
P | T | P | I | Q | K | C | S | I | P | V | I | S | S | G | R | D | . |
. |
L | M | A | C | A | Q | T | G | S | G | K | T | A | A | F | L | L | P | I | L | S | K | L | L | E | D | P | H | E | L | E | L | G | R | P | Q | V | V | I | V | S | P | T | R | E | L | A | I | Q | I | F | N |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| . | . |  |  |  |  |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|
| B | T | T | B |
| S |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
268 | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | |
|
. | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|