Job Description P76562 Confidence 97.16% Date Thu Jan 5 12:24:40 GMT 2012 Rank 140 Aligned Residues 98 % Identity 18% Template c1ymfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:genome polyprotein [contains: flavivirin PDBTitle: crystal structure of yellow fever virus ns3 helicase2 complexed with adp Resolution 2.60 Å

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		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.																			240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																										.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	.	.	.	.	G	R	A	I	V	T	A	P	A	K	A	S	T	D	V	L	A	Q	F	A	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	R	F	I	A	P	D	A	L	L	A
Query Conservation																										.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	V	L	D	F	H	P	G	A	G	K	T	R	R	F	L	P	Q	I	L	A	E	C	A	R	R	R	L	R	T	L	V	L	A	P	T	R	V	V	L	S	E	X	K	E	A	F	H	G	L	D	V	K	F	H	T	Q	A	F	S	A	H	G	S	G	R	E	V	I	D	A	X	C	H	A	T	L	T	Y
Template Known Secondary structure									T	T	S		T	T	T	T													T								S	S												T	T	S						S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
								252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.									.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure		.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	S	D	E	Q	A	D	W	L	V	V	D	E	A	A	A	I	P	A	P	L	L	H	Q	L	V	.	.	.	.	.	.	.	.	S	R	F	P	R	T	L	L	T	T	T	V	Q	G	Y
Query Conservation		.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	X	L	E	P	T	R	V	V	N	W	E	V	I	I	X	D	E	A	H	F	L	D	P	A	S	I	A	A	R	G	W	A	A	H	R	A	R	A	N	E	S	A	T	I	L	X	T	A	T	P	P	G	T
Template Known Secondary structure					S	S							S					T	T	T	T			S																T	T	S								S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions