Job Description P76562 Confidence 64.98% Date Thu Jan 5 12:24:40 GMT 2012 Rank 319 Aligned Residues 74 % Identity 26% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.							.	.	.	.	250	.
Predicted Secondary structure																															.	.	.	.								.	.														.							.	.	.	.	.	.							.	.	.	.	.	.
Query SS confidence																															.	.	.	.								.	.														.							.	.	.	.	.	.							.	.	.	.	.	.
Query Sequence		P	P	G	V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	G	R	.	.	.	.	A	I	V	T	A	P	A	.	.	K	A	S	T	D	V	L	A	Q	F	A	G	E	.	K	F	R	F	I	A	.	.	.	.	.	.	P	D	A	L	L	A	.	.	.	.	.	.
Query Conservation																															.	.	.	.								.	.														.							.	.	.	.	.	.							.	.	.	.	.	.
Alig confidence																															.	.	.	.								.	.														.							.	.	.	.	.	.							.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F
Template Known Secondary structure		S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	E	Q	A	D	W	L	V	V	D	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	N	K	M	D	I	I	I	V	D	T	A
Template Known Secondary structure				T	T		S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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