Job Description P76562 Confidence 53.12% Date Thu Jan 5 12:24:40 GMT 2012 Rank 350 Aligned Residues 62 % Identity 8% Template c1or7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma-e factor; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea Resolution 2.00 Å

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		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	S	L	G	C	L	L	R	L	L	Q	T	S	E	L	A	L	P	A	L	R	G	R	L	Q	K	N	A	S	D	A	Q	L	C	T	T	L	K	L	S	G	R	K	M	L	L	V	R	Q	R	E	E	A	A	Q	A	L	F	A	L	N	D
Query Conservation
Alig confidence																																											.
Template Conservation																																											.
Template Sequence		E	L	R	Q	I	V	F	R	T	I	E	S	L	P	E	D	L	R	M	A	I	T	L	R	E	L	D	G	L	S	Y	E	E	I	A	A	I	M	D	C	P	.	V	G	T	V	R	S	R	I	F	R	A	R	E	A	I	D	N	K	V	Q	P
Template Known Secondary structure														S													T	T											T	T	S		.
Template Predicted Secondary structure																																											.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions