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Job DescriptionP76562
Confidence37.63%DateThu Jan 5 12:24:40 GMT 2012
Rank404Aligned Residues108
% Identity19%Templatec1ny5A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  QQLLKQLMTMPPG. . VAAVTAARGRGKSALAGQLISRIAGR. . . . . AIVTAPAKASTDVLAQFAGEKFRFIAPDA. . . . L
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Template Sequence  KEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGF
Template Known Secondary structure  TT

S

STTSSSTTTTS
TTTS

B
TTSSTT

S
B

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   147..150.........160.........170.........180.........190.........200.........210.........220......
 
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Query Sequence  LASDEQADWLVVDEAAAIPAPLLHQLVSRF. . . . . . . . . . . . . . . . . PRTLLTTTVQ
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Template Sequence  FELA. DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN
Template Known Secondary structure  T.TTSSGGG

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BT

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   227..230 .........240.........250.........260.........270.........280..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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