 |
Job Description | P76562 | Confidence | 37.63% | Date | Thu Jan 5 12:24:40 GMT 2012 |
Rank | 404 | Aligned Residues | 108 |
% Identity | 19% | Template | c1ny5A_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:transcriptional regulator (ntrc family); |
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
|
Resolution | 2.40 Å |
|
 |
  |   |
181 | . | . | . | . | . | . | . | . | 190 | . | . | . | |
|
. | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | |
|
|
|
. |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
| . | . |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  | . | . | . | . | . |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  | . | . | . | . |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
Query Sequence |   |
Q | Q | L | L | K | Q | L | M | T | M | P | P | G | . |
. |
V | A | A | V | T | A | A | R | G | R | G | K | S | A | L | A | G | Q | L | I | S | R | I | A | G | R | . |
. |
. |
. |
. |
A | I | V | T | A | P | A | K | A | S | T | D | V | L | A | Q | F | A | G | E | K | F | R | F | I | A | P | D | A | . |
. |
. |
. |
L |
Query Conservation |   |
  |   |
|
|   |   |   |   |   |   |   |   |   | . | . |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |   |   |   |   | . | . | . | . | . |
|   |
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |
|   |
|   |
|
|
|   | . | . | . | . |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|
|   |
|
|   |
|
|
|
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
K | E | I | L | E | K | I | K | K | I | S | C | A | E | C | P | V | L | I | T | G | E | S | G | V | G | K | E | V | V | A | R | L | I | H | K | L | S | D | R | S | K | E | P | F | V | A | L | N | V | A | S | I | P | R | D | I | F | E | A | E | L | F | G | Y | E | K | G | A | F | T | G | A | V | S | S | K | E | G | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |
|
| S |
|  |  |  |  |
| S | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  | S | T | T | T | T | S |
|  |  |  |  |  | T | T | T | S |
|  |  |  |  |  |  |  |  |  |
| B |
| T | T | S | S | T | T |
|
| S |
| B |
|
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
147 | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . |
  |
  |   |
250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
280 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | A | S | D | E | Q | A | D | W | L | V | V | D | E | A | A | A | I | P | A | P | L | L | H | Q | L | V | S | R | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | R | T | L | L | T | T | T | V | Q |
Query Conservation |   |
  |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|   |   |
|
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
| . |   |   |
|
|
|   |
|   |   |
|   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |   |
Template Sequence |   |
F | E | L | A | . |
D | G | G | T | L | F | L | D | E | I | G | E | L | S | L | E | A | Q | A | K | L | L | R | V | I | E | S | G | K | F | Y | R | L | G | G | R | K | E | I | E | V | N | V | R | I | L | A | A | T | N | R | N |
Template Known Secondary structure |   |
 |  |  | T | . | T | T | S |  |  |  |  |  | S | G | G | G |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | S |  |  |
|
| B | T |
|
| S |
|  |  |
|
|
|  |  |  |  |  |  | S | S |
|
Template Predicted Secondary structure |   |
 |  |  |
| . |
|
|
|  |  |  |  |  |
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
227 | . | . | 230 | |
. | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|