Job Description P76562 Confidence 46.63% Date Thu Jan 5 12:24:40 GMT 2012 Rank 369 Aligned Residues 82 % Identity 24% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.												.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	A	V	T	A	A	R	G	R	G	K	S	A	L	A	G	Q	L	I	S	R	I	A	G	R	A	I	V	T	A	P	A	K	.	.	.	.	.	.	.	.	.	.	.	A	S	T	D	V	L	A	Q	F	A	G	E	K	F	R	F	I	A	P	D	A	L	L	A	S	D	E	Q	A	D	W	L	V	V	D
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	S	C	V	V	V	D
Template Known Secondary structure								S	T	T	S	S															S							G	G	G	S	T	T																			T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.															.	.	.	.	600	.	.	.
		263	.	.	.	.	.														.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query Sequence		E	A	A	A	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	L	L	H	Q	L	V	S	.	.	.	.	R	F	P	R	T	L	L	T	T	T	V	Q
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	Q	G	R	K	L	L	I	I	G	T	T	S
Template Known Secondary structure							T	T		B	T	T	T	T	B													T	T				S	T	T										S
Template Predicted Secondary structure
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions