Job Description P0A9D4 Confidence 99.85% Date Thu Jan 5 11:09:56 GMT 2012 Rank 26 Aligned Residues 221 % Identity 16% Template c3pmoA_ PDB info PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution Resolution 1.30 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	E	A	R	T	L	A	D	C	E	P	M	L	A	S	F	Y	H	A	T	L	L	K	H	E	N	L	G	S	A	L	S	Y	M	L	A	N	K	L	S	S	P	I	M	P	A	I	A	I	R	E	V	V	E	E	A	Y	A	A	D	P	E	M	I	A	S	A	A	C	D	I	Q	A	V	R	T	R	D	P
Query Conservation
Alig confidence													.	.																									.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.																									.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	Q	L	A	A	H	V	G	A	E	.	.	V	R	G	D	A	D	L	P	I	Q	G	L	A	T	L	Q	E	A	G	P	A	Q	L	S	.	.	F	L	A	N	P	Q	Y	R	K	Y	L	P	E	S	R	A	G	A	V	L	L	T	A	A	D	A	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T			.	.			S		T	T									G	G	G			T	T	S			.	.					G	G	G	G	G	G	G	G	G				S										T	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.																									.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	D	K	Y	S	T	P	L	L	Y	L	K	G	F	H	A	L	Q	A	Y	R	I	G	H	W	L	W	N	Q	G	R	R	A	L	A	I	F	L	Q	N	Q	V	S	V	T	F	Q	V	D	I	H	P	A	A	K	I	G	R	G	I	M	L	D	H	A	T	G	I	V	V	G	E	T	A	V	I	E	N	D
Query Conservation
Alig confidence																		.	.	.	.	.													.	.	.	.	.	.	.	.																							.	.
Template Conservation																		.	.	.	.	.													.	.	.	.	.	.	.	.																							.	.
Template Sequence		F	A	G	T	A	L	V	V	A	N	P	Y	L	A	Y	A	.	.	.	.	.	S	L	S	H	L	F	D	R	K	P	K	A	.	.	.	.	.	.	.	.	A	A	G	I	H	P	T	A	I	V	A	A	D	A	E	V	D	P	S	A	S	V	.	.	G	A	Y	A	V	I	E	S	G	A	R	I	G	A	G
Template Known Secondary structure			S	S						S								.	.	.	.	.				G	G	G							.	.	.	.	.	.	.	.		S				T	T					T	T					T	T				.	.		T	T					T	T					T	T
Template Predicted Secondary structure																		.	.	.	.	.													.	.	.	.	.	.	.	.																							.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	I	L	Q	S	V	T	L	G	G	T	G	K	S	G	G	D	R	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	I	G	A	H	C	V	I	G	A	R	S	V	I	G	E	G	G	W	L	A	P	R	V	T	L	Y	H	D	V	T	I	G	A	R	V	S	I	Q	S	G	A	V	I	G	G	E	G	F	G	F	A	N	E	K	G	V	W	Q	K	I	A	Q	I	G	G	V	T	I	G	D	D	V	E	I	G	A	N	T
Template Known Secondary structure						T	T					T	T					T	T					T	T					T	T					T	T					T	T														T	T															S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
																																															194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	I	R	E	G	V	M	I	G	A	G	A	K	I	L	G	N	I	E	V	G	R	G	A	K	I	G	A	G	S	V	V	L	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	D	R	G	A	L	S	D	T	L	I	G	N	G	V	K	L	D	N	Q	I	M	I	A	H	N	V	Q	I	G	D	H	T	A	M	A	A	C	V	G	I	S	G	S	A	K	I	G	R	H	C	M	L	A	G	G	V	G	L	V	G	H	I	E	I	C	D	N	V	F	V	T	G	M	T	M	V	T	R
Template Known Secondary structure							S	S	S						T	T					T	T					T	T					T	T					T	T					T	T					S	S					T	T					S	S					S	S					T	T					S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		229	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure					.																.
Query SS confidence					.																.
Query Sequence		P	V	P	.	P	H	T	T	A	A	G	V	P	A	R	I	V	G	K	.	P	D	S	D	K	P	S	M	D	M	D	Q	H	F	N	G	I	N	H	T
Query Conservation					.																.
Alig confidence					.																.
Template Conservation
Template Sequence		S	I	T	E	P	G	S	Y	S	S	G	T	A	M	Q	P	A	A	E	W	K	K	S	A	A	R	I	R	Q	L	D	D	M	A	R	R	L	Q	Q	L
Template Known Secondary structure			B		S							S																		T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions