Job Description P0A9D4 Confidence 99.80% Date Thu Jan 5 11:09:56 GMT 2012 Rank 30 Aligned Residues 149 % Identity 22% Template c3eh0C_ PDB info PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli Resolution 2.60 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Q	A	Y	R	I	G	H	W	L	W	N	Q	G	R	R	A	L	A	I	F	L	Q	N	Q	V	S	V	T	F	Q	V	D	I	H	P	A	A	K	I	G	R	G	I	M	L	D	H	A	T	G	I	V	V	G	E	T	A	V	I	E	N	D	V	S	I	L	Q	S	V	T	L	G	G	T	G	K	S	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.																							.	.
Template Conservation																			.	.	.	.	.	.	.	.																							.	.
Template Sequence		Y	L	T	Y	A	R	M	A	Q	I	L	D	T	T	P	Q	P	.	.	.	.	.	.	.	.	A	Q	N	I	A	P	S	A	V	I	D	A	T	A	K	L	G	N	N	V	S	I	.	.	G	A	N	A	V	I	E	S	G	V	E	L	G	D	N	V	I	I	G	A	G	C	F	V	G	K	N	S	K	I	G
Template Known Secondary structure												T						S	.	.	.	.	.	.	.	.		S	S	B		T	T					T	T					T	T				.	.		T	T					T	T					T	T					T	T					T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																							.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.									.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		190	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	S	R	L	W	A	N	V	T	I	Y	H	E	I	Q	I	G	Q	N	C	L	I	Q	S	G	T	V	V	G	A	D	G	F	G	Y	A	N	D	R	G	N	W	V	K	I	P	Q	I	G	R	V	I	I	G	D	R	V	E	I	G	A	C	T	T	I	D	R	G	A	L	D	D	T	I	I	G	N	G	V
Template Known Secondary structure		T	T					T	T					T	T					S	S					T	T														T	T															S	S					T	T							S	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
																														193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	K	I	R	E	G	V	M	I	G	A	G	A	K	I	L	G	N	I	E	V	G	R	G	A	K	I	G	A	G	S	V	V	L	Q	P	V	P	P	.	H	T	T	A	A	G	V	P	A	R	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation
Template Sequence		I	I	D	N	Q	C	Q	I	A	H	N	V	V	I	G	D	N	T	A	V	A	G	G	V	I	M	A	G	S	L	K	I	G	R	Y	C	M	I	G	G	A	S	V	I	N	G	H	M	E	I	C	D	K	V	T	V	T	G	M	G	M	V	M	R	P	I	T	E	P	G	V	Y	S	S	G	I	P	L	Q	P
Template Known Secondary structure					T	T					T	T					T	T					T	T					T	T					T	T					T	T					S	S					S	S					T	T					S		B		S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		244	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		V	G	K	.	P	D	S	D	K	P	S	M	D	M	D	Q	H	F	N	G	I	N	H	T	F	E
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		N	K	V	W	R	K	T	A	A	L	V	M	N	I	D	D	M	S	K	R	L	K	S	L	E	R
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions