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Job DescriptionP0A9D4
Confidence99.80%DateThu Jan 5 11:09:56 GMT 2012
Rank30Aligned Residues149
% Identity22%Templatec3eh0C_
PDB info PDB header:transferaseChain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   110.........120.........130.........140.........150.........160.........170.........180.........
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Query Sequence  ALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSG
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Template Sequence  YLTYARMAQILDTTPQP. . . . . . . . AQNIAPSAVIDATAKLGNNVSI. . GANAVIESGVELGDNVIIGAGCFVGKNSKIG
Template Known Secondary structure  T




S........
SSB
TT

TT

TT
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TT

TT

TT

TT

TT

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   80.........90...... ...100.........110........ .120.........130.........140.........
 
   190..
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Query Sequence  GDR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGV
Template Known Secondary structure  TT

TT

TT
SS

TT




TT






SS

TT


SSS

TT
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   150.........160.........170.........180.........190.........200.........210.........220.........
 
   193......200.........210.........220.........230.. .......240...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPP. HTTAAGVPARI
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Template Sequence  IIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQP
Template Known Secondary structure 
TT

TT

TT

TT

TT
TT

TT

SS
SS
TT

S
B
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   230.........240.........250.........260.........270.........280.........290.........300.........
 
   244.. ...250.........260........
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Query Sequence  VGK. PDSDKPSMDMDQHFNGINHTFE
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Template Sequence  NKVWRKTAALVMNIDDMSKRLKSLER
Template Known Secondary structure  TT
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   310.........320.........330.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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