 |
Job Description | P0A9D4 | Confidence | 98.71% | Date | Thu Jan 5 11:09:56 GMT 2012 |
Rank | 52 | Aligned Residues | 87 |
% Identity | 16% | Template | c1yp3C_ |
PDB info |
PDB header:transferase | Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small |
PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp
|
Resolution | 2.60 Å |
|
 |
  |   |
141 | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|  |  |
|
|
|
|  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|  |  |
|
|
|
|  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | V | D | I | H | P | A | A | K | I | G | R | G | I | M | L | D | H | A | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | I | V | V | G | E | T | A | V | I | E | N | D | V | S | I | L | Q | S | V | T | L | G | G | T | G | K | S | G | G | D | R | H | P | K | I | R | E | G | V | M | I | G | A | G | A | K | I | L | G |
Query Conservation |   |
|
|
|
|
|
|   |
|   |
|
|   |
|   |   |
|
|
|
|   | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|   |   |
|   |
|
|   |   |
|   |
|   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |
|   |
|
|
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |   |
|   | . |   |   |
|
|
|   |   | . | . | . | . | . | . | . | . |   |   |
|
|   |   |   |   |
|   |   |   |   |   |
|   |   |
Template Sequence |   |
R | S | C | I | S | E | G | A | I | I | E | D | S | L | L | M | G | A | D | Y | Y | E | T | D | A | D | R | K | L | L | A | A | K | G | S | V | P | I | G | I | G | K | N | C | H | I | K | . |
R | A | I | I | D | K | N | . |
. |
. |
. |
. |
. |
. |
. |
A | R | I | G | D | N | V | K | I | I | N | K | D | N | V | Q | E |
Template Known Secondary structure |   |
T |
|  |  |
| T | T |
|  |  |  | S |
|  |  |
|
|
| S | S |
|
|
|  |  |  |  |  |  |  |  |  | T | T |
|
|
| S | B | B |
| T | T |
|  |  |  | . | S |  |  |  |
| T | T | . | . | . | . | . | . | . | . |
|  |  |
| T | T |
|  |  |
|
| T | T |
|
|
|  |
Template Predicted Secondary structure |   |
|
|  |  |
|
|
|
|  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |
|
|
|
|  |  |
|
|
|
|  |  |
| . |
|  |  |  |
|
|
| . | . | . | . | . | . | . | . |
|  |  |
|
|
|
|  |  |
|
|
|
|  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
352 | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | |
. | 400 | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . |
  |
  |   |
211 | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | |
|
|
230 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |
|
|
|
|  |  |
|
|
|
|  |  |
|
|
| . | . | . |
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
N | I | E | V | G | R | G | A | K | I | G | A | G | S | V | V | L | Q | P | . |
. |
. |
V | P | P | H | T | T | A |
Query Conservation |   |
  |
|   |
|
|   |   |
|   |
|
|
|
|
|
|
|   |
|
| . | . | . |
|
|   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |   |   |   |
|   |   |
|   |   |
|
Template Sequence |   |
A | A | R | E | T | D | G | Y | F | I | K | S | G | I | V | T | V | I | K | D | A | L | I | P | S | G | I | I | I |
Template Known Secondary structure |   |
 |  |  | G | G | G | T |  |  |  |  | T | T |  |  |  |  |
| T | T |
|  |  |
| T | T |
| B |
|
Template Predicted Secondary structure |   |
|
|  |  |
|
|
|
|  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
423 | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|