 |
Job Description | P0AA53 | Confidence | 4.83% | Date | Thu Jan 5 11:11:56 GMT 2012 |
Rank | 70 | Aligned Residues | 75 |
% Identity | 12% | Template | c3lhkA_ |
PDB info |
PDB header:dna binding protein | Chain: A: PDB Molecule:putative dna binding protein mj0014; |
PDBTitle: crystal structure of putative dna binding protein from2 methanocaldococcus jannaschii.
|
Resolution | 2.20 Å |
|
 |
  |   |
128 | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . |
Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | L | S | Q | R | D | S | I | N | S | R | L | L | R | I | V | D | E | A | T | N | P | W | G | I | K | V | T | R | I | E | I | R | D | V | R | P | P | A | E | L | I | S | S | M | N | A | Q | M | K | A | E | R | T | K | R | A | Y | I | L | E | A | E | G | I | R | Q | A | E | I | L | K | A | E | G |
Query Conservation |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|   |
|   |   |
|   |
|   |   |
|   |   |
|   |   |   |   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
|
|
|   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |
|
|   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
Template Sequence |   |
I | I | A | Y | P | D | R | L | T | R | F | G | F | E | T | L | K | E | F | F | K | S | Y | G | T | E | I | V | I | I | N | K | K | H | K | T | P | Q | E | E | L | V | E | D | L | I | T | I | V | S | H | F | A | G | K | L | Y | G | X | H | S | H | K | Y | K | K | L | T | K | T | V | K | E | I | V |
Template Known Secondary structure |   |
 |  | S | S |  |  |  |  |
| S | S |
|  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  | S |
| S | S |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|