Job Description P0AA53 Confidence 4.81% Date Thu Jan 5 11:11:56 GMT 2012 Rank 71 Aligned Residues 74 % Identity 19% Template c3ayhB_ PDB info PDB header:transcription Chain: B: PDB Molecule:dna-directed rna polymerase iii subunit rpc8; PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii Resolution 2.19 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.								.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.												.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	V	K	I	V	P	Q	G	Y	Q	W	T	V	E	R	F	.	.	.	.	.	.	.	G	R	Y	T	K	T	L	Q	P	G	L	S	L	V	V	P	F	M	D	R	I	G	R	K	I	N	M	M	E	Q	V	L	D	I	P	S	Q	E	V	I	.	.	.	.	.	.	.	.	.	.	.	S	K	D	N	A
Query Conservation																			.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	S	S	Y	M	N	V	V	F	R	L	I	I	F	R	P	F	R	G	E	V	M	L	G	K	I	K	S	C	S	E	E	G	I	R	V	T	I	S	F	F	D	D	I	F	I	P	K	D	M	L	F	D	P	C	V	F	R	P	D	E	R	A	W	V	W	K	I	E	G	E	D	G	S	E	G	T	E	L
Template Known Secondary structure		T																		T	T												T	T							S	S								G	G	G	B		T	T					G	G	G	T										T	T	S
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	T	I	D	A	V	C	F	I	Q	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	F	D	I	D	E	E	I	R	F	Q	I
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions