Job Description P0AA53 Confidence 98.41% Date Thu Jan 5 11:11:56 GMT 2012 Rank 4 Aligned Residues 245 % Identity 16% Template c2zv4O_ PDB info PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution Resolution 3.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60										.	.	.	.	.	.	.	.	.	70							.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																.	.																											.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Query SS confidence																.	.																											.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Query Sequence		K	I	V	P	Q	G	Y	Q	W	T	V	E	R	F	.	.	G	R	Y	T	K	T	L	Q	P	G	L	S	L	V	V	P	F	M	D	R	I	G	R	K	I	N	.	.	.	.	.	.	.	.	.	M	M	E	Q	V	L	D	I	P	S	.	.	.	.	.	.	Q	E	V	I	S	K	D	N	A	N	V	T	I
Query Conservation																.	.																											.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Alig confidence																.	.																											.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Template Conservation
Template Sequence		Y	R	V	P	H	N	A	A	V	Q	V	Y	D	Y	R	A	K	R	A	R	V	V	F	G	P	E	L	V	T	L	D	P	E	E	Q	F	T	V	L	S	L	S	A	G	R	P	K	R	P	H	A	R	R	A	L	C	L	L	L	G	P	D	F	F	T	D	V	I	T	I	E	T	A	D	H	A	R	L	Q	L
Template Known Secondary structure						T	T								T	T	T								T	T							T	T											S	S	S			T	T	S				S	S				S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.						.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.						150	.
Predicted Secondary structure										.	.	.	.	.								.	.																																																				.	.	.	.	.
Query SS confidence										.	.	.	.	.								.	.																																																				.	.	.	.	.
Query Sequence		D	A	V	C	F	I	Q	V	.	.	.	.	.	I	D	A	P	R	A	A	.	.	Y	E	V	S	N	L	E	L	A	I	I	N	L	T	M	T	N	I	R	T	V	L	G	S	M	E	L	D	E	M	L	S	Q	R	D	S	I	N	S	R	L	L	R	I	V	D	E	A	T	N	P	.	.	.	.	.	W	G
Query Conservation										.	.	.	.	.								.	.																																																				.	.	.	.	.
Alig confidence										.	.	.	.	.								.	.																																																				.	.	.	.	.
Template Conservation
Template Sequence		Q	L	A	Y	N	W	H	F	E	L	K	N	R	N	D	P	A	E	A	A	K	L	F	S	V	P	D	F	V	G	D	A	C	K	A	I	A	S	R	V	R	G	A	V	A	S	V	T	F	D	D	F	H	K	N	S	A	R	I	I	R	M	A	V	F	G	F	E	K	A	R	D	Q	A	V	F	P	Q	N	G
Template Known Secondary structure												S		S	S							G	G	G	S	S	T	T																		T	T	S																	S	S							S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		I	K	V	T	R	I	E	I	R	D	V	R	P	P	A	E	L	I	S	S	M	N	A	Q	M	K	A	.	.	.	E	R	T	K	R	A	Y	I	L	E	A	E	G	I	R	Q	A	E	I	L	K	A	E	G	E	K	Q	S	Q	I	L	K	A	E	G	E	R	Q	S	A	F	L	Q	A	E	A	R	E	R	S
Query Conservation																													.	.	.
Alig confidence																													.	.	.
Template Conservation
Template Sequence		L	V	V	S	S	V	D	V	Q	S	V	E	P	V	D	Q	R	T	R	D	A	L	Q	R	S	V	Q	L	A	I	E	I	T	T	N	S	Q	E	A	A	A	K	H	E	A	Q	R	L	E	Q	E	A	R	G	R	L	E	R	Q	K	I	L	D	Q	S	E	A	E	K	A	R	K	E	L	L	E	L	E	A	M
Template Known Secondary structure															S	S
Template Predicted Secondary structure
Template SS confidence
		633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	A	E	A	R	A	T	K	M	V	S	E	A	I	A	S	G	D	I	Q	A	V	N	Y	F	V	A	Q	K	Y	T	E	A	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	M	A	V	E	S	T	G	N	A	K	A	E	A	E	S	R	A	E	A	A	R	I	E	G	E	G	S	V	L	Q	A	K	L	K	A	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		713	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions