Job Description P07024 Confidence 100.00% Date Thu Jan 5 11:00:06 GMT 2012 Rank 8 Aligned Residues 308 % Identity 23% Template c3jyfB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- PDBTitle: the crystal structure of a 2,3-cyclic nucleotide 2-2 phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor3 protein from klebsiella pneumoniae subsp. pneumoniae mgh 78578 Resolution 2.43 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Query Sequence		D	K	T	Y	K	I	T	V	L	H	T	N	D	H	H	G	H	F	W	R	N	E	Y	.	.	.	.	.	.	G	E	Y	G	L	A	A	Q	K	T	L	V	D	G	I	R	K	E	V	A	A	E	G	G	S	V	L	L	L	S	G	G	D	I	N	T	G	V	P	E	S	D	L	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		A	A	T	V	D	L	R	I	X	E	T	T	D	L	H	S	N	X	X	D	F	D	Y	Y	K	D	A	A	T	E	K	F	G	L	V	R	T	A	S	L	I	E	Q	A	R	.	.	.	.	A	E	V	K	N	S	V	L	V	D	N	G	D	V	I	Q	G	S	P	L	G	D	Y	X	A	A	K	G	L	K	E
Template Known Secondary structure																T	T			S	S			T	T	T	T				S	S															.	.	.	.		T		S								S			S	S	S	S													T
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.										160	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.
Query Sequence		Q	D	A	E	P	D	F	R	G	M	N	L	V	G	Y	D	A	M	A	I	G	N	H	E	F	D	N	P	L	T	V	L	R	Q	Q	E	K	W	A	K	F	P	L	L	S	A	N	I	Y	Q	K	S	T	G	E	R	L	F	K	P	W	A	L	F	K	.	.	.	.	.	.	.	.	.	R	Q	D	L	K	I
Query Conservation																																																																			.	.	.	.	.	.	.	.	.
Alig confidence																																																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	V	H	P	V	Y	K	A	X	N	T	L	N	Y	A	V	G	N	L	G	N	H	E	F	N	Y	G	L	D	F	L	H	K	A	L	A	G	A	K	F	P	Y	V	N	A	N	I	I	D	A	K	T	G	K	P	X	F	T	P	Y	L	I	Q	D	T	R	V	V	D	S	D	G	Q	I	H	T	L	R	I
Template Known Secondary structure		T										T	T	S			S						G	G	G	G	T	T													S	S					S	S				T	T	T	T			S	S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	I	G	L	T	T	D	D	T	A	K	I	G	N	P	E	Y	F	T	D	I	E	F	R	K	P	A	D	E	A	K	L	V	I	Q	E	L	Q	Q	T	E	K	P	D	I	I	I	A	A	T	H	M	G	H	Y	D	N	G	E	H	G	S	N	A	P	G	D	V	E	M	A	R	A	L	P	A	G	S	L
Query Conservation
Alig confidence																																										.																									.	.	.
Template Conservation																																										.																									.	.	.
Template Sequence		G	Y	I	G	F	V	P	P	Q	I	X	T	W	D	K	A	N	L	N	G	K	V	T	V	N	D	I	T	E	T	A	R	K	Y	I	P	E	X	R	A	.	K	G	A	D	V	V	V	V	V	A	H	S	G	L	S	A	D	P	Y	Q	A	X	A	E	.	.	.	N	S	V	Y	Y	L	S	Q	V	P	G	V
Template Known Secondary structure									T	T					T					T	T	T																				.	T	T		S													S				T	T		S	.	.	.							T	T	S	T	T
Template Predicted Secondary structure																																										.																									.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.					.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		A	M	I	V	G	G	H	S	Q	D	P	V	C	M	A	A	E	N	K	K	Q	V	D	Y	V	P	G	T	P	C	K	P	D	Q	Q	N	G	I	W	I	V	Q	A	H	E	W	G	K	Y	V	G	R	A	D	F	E	F	R	N	G	.	.	.	.	E	M	K	M	V	N	Y	Q	L	I	P	V	N	L	K	K
Query Conservation																																																														.	.	.	.
Alig confidence														.	.	.	.	.																																												.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		D	A	I	X	F	G	H	A	H	A	V	F	.	.	.	.	.	P	G	K	D	F	A	N	I	K	G	A	D	I	A	K	G	T	L	N	G	V	P	A	V	X	P	G	X	W	G	D	H	L	G	V	V	D	L	V	L	N	N	D	S	G	K	W	Q	V	T	Q	S	K	A	E	A	R	P	I	Y	D	A	V
Template Known Secondary structure								S	S					.	.	.	.	.	S	S	G	G	G	T	T	S	T	T			T	T	T	T			T	T								S	T	T	S												T	T	S	S													S			T	T
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	T	W	E	D	G	K	S	E	R	V	L	Y	T	P	E	I	A	E	N	Q	Q	M	I	S	L	L	S	P	F	Q	N	K	G	K	A	Q	L	E
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	K	S	L	.	.	.	.	.	.	.	.	.	.	.	.	A	A	E	D	G	K	L	V	S	V	L	K	A	D	H	D	A	T	R	E	F	V	S
Template Known Secondary structure		T	T			S	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.													.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions