Job Description P07024 Confidence 99.46% Date Thu Jan 5 11:00:06 GMT 2012 Rank 24 Aligned Residues 202 % Identity 15% Template c3av0A_ PDB info PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s Resolution 3.10 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		I	T	V	L	H	T	N	D	H	H	G	H	F	W	R	N	E	Y	G	E	Y	G	L	A	A	Q	K	T	L	V	D	G	I	R	K	E	V	A	A	E	G	G	S	V	L	L	L	S	G	G	D	I	N	T	G	V	P	.	.	E	S	D	L	Q	D	A	E	P	D	F	R	G	M	N	L	V	G	Y	D	A
Query Conservation																																																											.	.
Alig confidence																							.																										.										.	.
Template Conservation																							.																										.
Template Sequence		M	M	F	V	H	I	A	D	N	H	L	G	Y	R	Q	Y	N	L	D	D	R	.	E	K	D	I	Y	D	S	F	K	L	C	I	K	K	I	L	E	I	K	P	D	V	V	L	H	.	S	G	D	L	F	N	D	L	R	P	P	V	K	A	L	R	I	A	M	Q	A	F	K	K	L	H	E	N	N	I	K	V
Template Known Secondary structure												B	T			G	G	G					.																	T	T			S					.		S		S	B	S	S	S	S																			T	T
Template Predicted Secondary structure																							.																										.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		112	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		M	A	I	.	G	N	H	E	F	D	N	P	L	T	V	L	R	Q	Q	E	K	W	A	K	F	P	L	L	S	A	N	I	Y	Q	K	S	T	G	E	R	L	F	K	P	W	A	L	F	K	R	Q	D	L	K	I	A	V	I	G	L	T	T	D	D	T	A	K	I	G	N	P	E	Y	F	T	D	I	E	F	R
Query Conservation					.
Alig confidence					.																									.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	I	V	A	G	N	H	E	M	P	R	R	L	G	E	E	S	P	L	A	L	L	K	D	Y	V	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	G	K	D	V	I	N	V	N	G	E	E	I	F	I	C	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	H	K	K	S
Template Known Secondary structure							G	G	G	S		S	S	T	T	S			G	G	G	G	G	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.		S								T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.														.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.															.	.	.	.	130	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	A	D	E	A	K	L	V	I	Q	E	L	Q	Q	T	E	K	P	D	I	I	I	A	A	T	H	M	G	H	Y	D	N	G	E	H	G	S	N	A	P	G	D	V	E	M	A	R	A	L	P	A	G	S	L	A	M	I	V	G	G	H	S	Q	D	P	V	C	M	A	A	E	N	K	K	Q	V	D	Y	V
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	E	E	M	L	D	K	L	K	N	F	E	S	E	A	K	N	Y	K	K	K	I	L	M	L	H	Q	G	I	N	P	Y	I	P	L	D	Y	E	L	.	.	.	.	.	.	.	E	H	F	D	L	P	K	F	S	Y	Y	A	L	G	H	I	H	K	R	I	L	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T																	T		S	S										T	T	T	S	S	S	S		S	S	.	.	.	.	.	.	.		G	G	G	S				S						S			S				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.								.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	T	P	C	K	P	D	Q	Q	N	G	I	W	I	V	Q	A	H	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	R	F	N	D	G	I	L	A	Y	S	G	S
Template Known Secondary structure		.	.	.	.	.	.	.				S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									193	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions