Job Description P0A766 Confidence 13.06% Date Thu Jan 5 11:04:57 GMT 2012 Rank 20 Aligned Residues 168 % Identity 12% Template c2wwbA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome Resolution 6.48 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		F	V	L	V	K	F	L	G	L	C	P	F	M	G	V	S	K	K	L	E	T	A	M	G	M	G	L	A	T	T	F	V	M	T	L	A	S	I	C	A	W	L	I	D	T	W	I	L	I	P	L	N	L	I	.	Y	L	R	T	L	A	F	I	L	V	I	A	V	V	V	Q	F	T	E	M	V	V	R	K	T
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence		I	T	I	G	Q	S	I	V	Y	V	M	T	G	M	Y	G	D	P	S	E	M	G	A	G	I	C	L	L	I	T	I	Q	L	F	V	A	G	L	I	V	L	L	L	D	E	L	L	Q	K	G	Y	G	L	G	S	G	I	S	L	F	I	A	T	N	I	C	E	T	I	V	W	K	A	F	S	P	T	T	V	N
Template Known Secondary structure														T	S	S			S	S		S																												T	T	T		S	S		S																		T			S	S		S
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		S	P	V	L	Y	R	L	L	G	I	F	L	P	L	I	T	T	N	C	A	V	L	G	V	A	L	L	N	I	N	L	G	H	N	F	L	Q	S	A	L	Y	G	F	S	A	A	V	G	F	S	L	V	M	V	L	F	A	A	I	R	E	R	L	.	.	A	V	A	D	V	P	A	P	F	R	G	N	A	I	A
Query Conservation																																																																	.	.
Alig confidence																																																																	.	.
Template Conservation
Template Sequence		T	G	R	G	M	E	F	E	G	A	I	I	A	L	F	H	L	L	A	T	R	T	D	K	V	R	A	L	R	E	A	F	Y	R	Q	N	L	P	N	L	M	N	L	I	A	T	I	F	V	F	A	V	V	I	Y	F	Q	G	F	R	V	D	L	P	I	K	S	A	R	Y	R	G	Q	Y	N	T	Y	P	I	K
Template Known Secondary structure					S			T	T	T	T											T		T	T	S	S	S	S	S	S		S	S	S	S	S																									B						B		S	S	S	S	B		S				B
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		174	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	T	A	G	L	M	S	L	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	Y	T	S	N	I	P	I	I	L
Template Known Secondary structure		T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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